Software Map
Project Tree
Now limiting view to projects in the following categories:
Intended Audience :: End Users/Desktop [Remove This Filter]
Development Status :: 3 - Alpha [Remove This Filter]
Intended Audience :: Developers [Remove This Filter]
Natural Language :: English [Remove This Filter]
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl |
- Development Status : 3 - Alpha (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Genetics : Population Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-06-14 14:51 |
1. SynergizeR - This package provides programmatic access to The Synergizer service for translating between sets of biological identifiers. |
- Development Status : 3 - Alpha (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
|
Activity Percentile: 0.00
Registered: 2011-11-04 17:46 |
2. Bias reduction in GLMs - brglm provides brglm.fit which is an alternative method to glm.fit that works under the usual glm interface.
Estimation is either by correcting the bias of the maximum likelihood estimates or using an adjusted-score approach to improving bias. |
- Development Status : 3 - Alpha (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Regression Models [Filter]
- Topic : Social Sciences : Analysis of Categorical and Count Data [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
|
Activity Percentile: 0.00
Registered: 2011-08-20 14:19 |
3. Analysis of Independent Contrasts - The CAIC package provides methods for the comparative analysis of taxa using independent contrasts methods. It reimplements the methods of the CAIC and MacroCAIC programs will implement alternative methods such as those provided in LDAP. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Genetics : Phylogenetics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-01-31 15:29 |
4. quantmod: financial modelling - Designed to bring fast, full, and extensible access of R statistical tools to the quantitative developer.
This project has moved from R-Forge to GitHub:
https://github.com/joshuaulrich/quantmod |
- Development Status : 3 - Alpha (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Econometrics [Filter]
- Topic : Finance : Data and Date Management [Filter]
|
Activity Percentile: 0.00
Registered: 2008-01-10 19:53 |
5. ggcluster - plot cluster data w/ ggplot2 - Tools for creating cluster plots, tree plots and dendrograms using ggplot.
ggcluster provides a convenient, generic extractor function that can handle dendrogram, tree, kmeans, hclust and Mclust objects. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Programming Language : R [Filter]
- Topic : Cluster Analysis [Filter]
- Topic : Graphics : Plotting [Filter]
|
Activity Percentile: 0.00
Registered: 2011-07-13 08:40 |
6. RevoExts - RevoExts is a project for open-source, third-party packages extending Revolution Analytics' RevoScaleR. |
- Development Status : 2 - Pre-Alpha [Filter]
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
|
Activity Percentile: 0.00
Registered: 2011-05-09 17:31 |
7. Quadratic programming modeling language - An intuitive modeling language for quadratic programs, and functions to generate the standard form matrices required to use solve.QP(). |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Optimization : Mathematical Programming : Quadratic Programming [Filter]
- Topic : Software Development : Code Generators [Filter]
|
Registered: 2011-04-22 14:44 |
8. Phylobase Extension - This package provides classes and methods which help read/write/manipulate branch-annotated phylogenetic trees (SIMMAP-format) and supports for a few other extra phylogenetic tree features (like tree weight).
|
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX [Filter]
- Programming Language : R [Filter]
- Topic : Genetics : Phylogenetics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-04-26 02:20 |
9. Bertin matrices - Matrix manipulation and display, following the proposals of J. Bertin.
Bertin’s permutation matrices give simple and effective tools for the graphical analysis of data matrices or tables. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Graphics : Applications [Filter]
- Topic : Graphics : Dynamic Graphics [Filter]
- Topic : Graphics : Plotting [Filter]
|
Activity Percentile: 0.00
Registered: 2007-11-29 20:50 |
10. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS. |
- Development Status : 3 - Alpha (Now Filtering)
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-10-20 01:21 |
11. Rshare: the shared environment package - The Rshare package allows for a version of interprocess communication between separate R processes. This is facilitated through a shared environment hosted in one R session to which other R processes may subscribe. |
- Development Status : 3 - Alpha (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Connectivity [Filter]
|
Activity Percentile: 0.00
Registered: 2012-07-03 04:36 |
12. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
- Topic : Bioinformatics : Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-09-06 17:05 |
13. openrepgrid - The openrepgrid package provides means for numerical analysis and high-quality graphical repesentation of repertory grids - a data collection method used in psychological research. |
- Development Status : 3 - Alpha (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Programming Language : R [Filter]
- Topic : Multivariate Statistics : Visualising Multivariate Data : Graphical Procedures [Filter]
- Topic : Social Sciences [Filter]
|
Activity Percentile: 0.00
Registered: 2010-10-27 15:55 |
14. Diagnostic and prognostic meta-analysis - This package provides functions for diagnostic and prognostic meta-analyses. It estimates univariate, bivariate and multivariate models, and allows the aggregation of previously published prediction models with new data. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Programming Language : R [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Multivariate Statistics [Filter]
- Topic : Regression Models [Filter]
|
Activity Percentile: 0.00
Registered: 2012-08-09 13:01 |
15. Multiprecision Complex Number Arithmetic - An interface to the mpc library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : POSIX [Filter]
- Programming Language : R [Filter]
- Topic : Numerical Analysis : Numerical Methods in Complex Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2011-03-30 06:37 |
16. sampSurf - Sampling surface simulation - This package will allow the estimation of sampling surfaces over a spatial extent for use in assessing different areal sampling methods used in forestry and ecology. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Programming Language : R [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2010-11-24 18:59 |
17. rProcessing - R/Processing Interface - An easy to use interface to run Processing applets (http://processing.org/) from R. |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : Java [Filter]
- Programming Language : Other [Filter]
- Programming Language : R [Filter]
- Topic : Graphics : Graphics Systems [Filter]
|
Activity Percentile: 0.00
Registered: 2010-03-21 13:58 |
18. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm. |
- Development Status : 3 - Alpha (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics [Filter]
- Topic : Genetics [Filter]
- Topic : Graphical Models [Filter]
|
Activity Percentile: 0.00
Registered: 2011-01-07 17:53 |
19. Raster Time Series - This package aims to provide classes and methods for manipulating and processing of raster time series data (e.g. a time series of satellite images). |
- Development Status : 3 - Alpha (Now Filtering)
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Programming Language : R [Filter]
- Topic : Spatial Data & Statistics : Classes for Spatial Data [Filter]
- Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]
- Topic : Time Series [Filter]
|
Activity Percentile: 0.00
Registered: 2012-07-07 21:08 |
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>