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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2008-08-21 11:49 |
1. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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Registered: 2010-03-05 10:51 |
2. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-06-10 12:24 |
3. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven. |
- Development Status : 4 - Beta [Filter]
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- Topic : Numerical Analysis : Prob\. Methods, Simulation and Stochastic Differential Equations [Filter]
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Registered: 2011-11-29 13:02 |
4. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press. |
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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Registered: 2011-02-18 14:08 |
5. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model. |
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Registered: 2011-12-05 20:42 |
6. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. |
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
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Registered: 2010-09-06 17:05 |
7. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. |
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Registered: 2009-11-30 09:36 |
8. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study. |
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Registered: 2011-04-19 11:00 |
9. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model. |
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Registered: 2012-07-03 03:50 |
10. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. |
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Registered: 2012-07-12 22:01 |
11. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures |
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Registered: 2009-04-17 15:10 |
12. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges. |
- Development Status : 1 - Planning [Filter]
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Registered: 2011-03-07 18:54 |
13. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data. |
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Registered: 2012-10-16 20:41 |
14. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2011-05-10 07:45 |
15. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data |
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Registered: 2008-10-09 17:22 |
16. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function. |
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Registered: 2017-08-30 21:22 |
17. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis. |
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Registered: 2020-04-25 19:28 |
18. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2012-06-13 23:35 |
19. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented. |
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Registered: 2013-07-05 08:44 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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