Software Map
Project Tree
|
Browse By: |
59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface. | |
|
Activity Percentile: 94.74 Registered: 2013-08-29 17:48 |
1. modEvA - modEvA is an R package for species distribution model evaluation and analysis. | |
|
Activity Percentile: 47.37 Registered: 2014-04-04 11:51 |
2. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor. | |
|
Activity Percentile: 0.00 Registered: 2010-04-01 17:54 |
3. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data. | |
|
Activity Percentile: 0.00 Registered: 2012-10-16 20:41 |
4. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples. | |
|
Registered: 2012-06-13 23:35 |
5. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions. | |
|
Activity Percentile: 0.00 Registered: 2009-11-20 16:56 |
6. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests. | |
|
Activity Percentile: 0.00 Registered: 2011-10-07 17:59 |
7. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates | |
|
Activity Percentile: 0.00 Registered: 2011-09-14 03:27 |
8. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/ | |
|
Activity Percentile: 0.00 Registered: 2016-10-08 19:20 |
9. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included. | |
|
Activity Percentile: 0.00 Registered: 2010-09-06 17:05 |
10. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details. | |
|
Activity Percentile: 0.00 Registered: 2009-11-30 09:36 |
11. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions. | |
|
Activity Percentile: 0.00 Registered: 2011-05-10 07:45 |
12. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
| |
|
Activity Percentile: 0.00 Registered: 2010-03-05 10:51 |
13. McrBC/CHARM DNA methylation analysis - Analysis of DNA methylation microarray data from the McrBC/CHARM platform | |
Activity Percentile: 0.00 Registered: 2009-12-08 18:22 |
14. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model. | |
|
Activity Percentile: 0.00 Registered: 2011-12-05 20:42 |
15. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. | |
|
Activity Percentile: 0.00 Registered: 2009-10-07 19:54 |
16. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class. | |
|
Activity Percentile: 0.00 Registered: 2008-07-24 04:32 |
17. GenABEL - A suite of packages for statistical genomics | |
|
Registered: 2009-08-12 17:07 |
18. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments. | |
|
Activity Percentile: 0.00 Registered: 2012-07-01 21:32 |
19. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function. | |
|
Activity Percentile: 0.00 Registered: 2017-08-30 21:22 |
59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>