Software Map
Project Tree
Now limiting view to projects in the following categories:
Programming Language :: R [Remove This Filter]
Topic :: Genetics :: Phylogenetics [Remove This Filter]
Natural Language :: English [Remove This Filter]
Intended Audience :: Developers [Remove This Filter]
License :: OSI Approved :: GNU General Public License (GPL) [Remove This Filter]
8 projects in result set.
0. Analysis of Independent Contrasts - The CAIC package provides methods for the comparative analysis of taxa using independent contrasts methods. It reimplements the methods of the CAIC and MacroCAIC programs will implement alternative methods such as those provided in LDAP.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2008-01-31 15:29 |
1. OMearaLab - This project hosts scripts being developed by the O'Meara lab ( http://www.brianomeara.info ), typically for use in comparative methods. This is primarily an incubator for things in a raw state (before becoming projects of their own) or one-off scripts.
|
- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2011-01-12 20:42 |
2. SPecies' LImits by Threshold Statistics - splits contains tools for delimiting species and automated taxonomy at many levels of biological organization (eg. DNA barcoding, morphometrics), top-down (merging phylogenetic and phylogeographic methods) and bottom-up (single samples into >1 groups).
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2009-01-15 14:06 |
3. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : Java [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics [Filter]
- Topic : Genetics : Phylogenetics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
4. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl
|
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-06-14 14:51 |
5. adephylo - The package 'adephylo' implements multivariate approaches for comparative data, i.e. data including one phylogeny and one or several traits.
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
- Topic : Multivariate Statistics : Projection Methods [Filter]
|
Activity Percentile: 0.00
Registered: 2008-11-18 15:35 |
6. Phylobase Extension - This package provides classes and methods which help read/write/manipulate branch-annotated phylogenetic trees (SIMMAP-format) and supports for a few other extra phylogenetic tree features (like tree weight).
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2011-04-26 02:20 |
7. phylobase - Defining the basic S4 classes and methods for representing and manipulating phylogenetic trees and data in R.
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English (Now Filtering)
- Operating System : OS Independent [Filter]
- Programming Language : R (Now Filtering)
- Topic : Genetics : Phylogenetics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2007-12-14 19:17 |
