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59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl
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- Development Status : 3 - Alpha [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2011-06-14 14:51 |
1. SynergizeR - This package provides programmatic access to The Synergizer service for translating between sets of biological identifiers.
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Registered: 2011-11-04 17:46 |
2. addendum - Utility functions that should have been in R: easy glmnet, pretty graphing and swift debugging and profiling.
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- Topic : Machine Learning : Model Selection and Validation [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
- Topic : Regression Models [Filter]
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Registered: 2011-06-17 13:35 |
3. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.
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- Topic : Computational Physics [Filter]
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- Topic : High Performance Computing : Large Memory [Filter]
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Registered: 2009-06-17 16:54 |
4. NeuroSpatCo - The package is used to search for patterns of organization in human prefrontal cortex of both horizontal (cell body) and vertical plane (minicolumns).
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
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Registered: 2011-05-10 20:54 |
5. arules - Mining Association Rules - Infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules).
arules is now maintained on Github: https://github.com/mhahsler/arules
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Registered: 2007-05-21 13:55 |
6. Linear quantile mixed models - This project is aimed at developing an R package to fit and analyse quantile regression models with random effects.
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Registered: 2012-05-15 16:23 |
7. arm - R functions for processing lm, glm, mer and polr outputs.
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- Topic : Bayesian Statistics [Filter]
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Registered: 2008-04-09 23:40 |
8. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model.
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2012-07-03 03:50 |
9. Phylobase Extension - This package provides classes and methods which help read/write/manipulate branch-annotated phylogenetic trees (SIMMAP-format) and supports for a few other extra phylogenetic tree features (like tree weight).
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- Topic : Genetics : Phylogenetics [Filter]
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Registered: 2011-04-26 02:20 |
10. Summarizing Data with Graphs - Summarizing Data with Graphs
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- Topic : Graphical Models [Filter]
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Registered: 2009-01-19 07:50 |
11. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
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- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2010-01-08 16:59 |
12. move: analyze animal movement data - move is a package that contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyse animal movement data. Move addresses movement ecological questions.
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
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Registered: 2012-03-28 07:52 |
13. qsaR in R - This project aims at building a flexible framework for working with QSAR in R.
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2012-10-22 23:24 |
14. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
15. Modelling Peaks Over Threshold - The project consists in developing functions for peaks over threshold modeling. Most of results come from the extreme value theory (EVT). The EVT is currently extensively used, mostly in environmental sciences and finance.
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- Topic : Finance : Risk Management : Value at Risk [Filter]
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Registered: 2007-09-21 14:29 |
16. lme4 - Mixed-effects models - An R package for fitting and analyzing linear, nonlinear and generalized linear mixed models.
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- Topic : Regression Models [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
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Registered: 2007-08-17 17:27 |
17. greenbrown - greenbrown is a collection of functions to analyse trends, trend changes and phenology in gridded time series like from satellite observations or climate model simulations.
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Registered: 2013-02-27 17:37 |
18. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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Registered: 2012-08-10 08:48 |
19. Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods
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- Topic : Environmetrics [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2011-01-24 12:50 |
59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
