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Topic :: Bioinformatics [Remove This Filter]
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : French [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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- Topic : Genetics [Filter]
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Activity Percentile: 36.84
Registered: 2008-07-28 09:03 |
1. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs). |
- Development Status : 6 - Mature [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Environmetrics [Filter]
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Activity Percentile: 31.58
Registered: 2021-07-15 19:48 |
2. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 0.00
Registered: 2016-04-21 23:06 |
3. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry. |
- Development Status : 3 - Alpha [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 0.00
Registered: 2011-04-04 14:59 |
4. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
5. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-23 21:21 |
6. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2014-11-28 09:55 |
7. NameNeedle - Using Needleman-Wunsch to Match Sample Names |
- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2014-02-03 16:21 |
8. Tools for the analysis of genomic data - 'Repitools' -- analysis of epigenomics data.
'RepitoolsExamples' -- example data for Repitools.
'FIRMAGene' -- differential splicing using Gene 1.0ST arrays.
'gsmoothr' -- smoothing functions re-written in C. |
- Development Status : 4 - Beta [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 0.00
Registered: 2009-05-08 21:57 |
9. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution. |
- Development Status : 1 - Planning [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
10. Atlas and Analysis - Atlas and Analysis (A2) of pathways (curated) |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2018-01-19 16:21 |
11. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network. |
- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2014-10-23 15:21 |
12. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods. |
- Development Status : 2 - Pre-Alpha [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-17 20:46 |
13. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis). |
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
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Activity Percentile: 0.00
Registered: 2010-02-24 09:24 |
14. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : German [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
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Activity Percentile: 0.00
Registered: 2011-05-18 08:28 |
15. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed. |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Marketing & Business Analytics [Filter]
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Activity Percentile: 0.00
Registered: 2010-05-06 10:59 |
16. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees. |
- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2008-11-07 19:39 |
17. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins. |
- Development Status : 4 - Beta [Filter]
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- Topic : Chemoinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2011-05-13 20:48 |
18. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : Java [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
19. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
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- Programming Language : Java [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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