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Topic :: Bioinformatics [Remove This Filter]
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. RHRV - Package for carrying out heart rate variability studies of ECG records
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- Development Status : 6 - Mature [Filter]
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- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 83.33
Registered: 2010-10-14 10:22 |
1. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Chemoinformatics [Filter]
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Activity Percentile: 66.67
Registered: 2011-05-13 20:48 |
2. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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- Topic : Machine Learning [Filter]
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Activity Percentile: 0.00
Registered: 2012-08-10 08:48 |
3. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
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- Environment : Web Environment [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- License : Other/Proprietary License [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database [Filter]
- Topic : Genetics [Filter]
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Activity Percentile: 0.00
Registered: 2009-05-19 20:01 |
4. Tools for the analysis of genomic data - 'Repitools' -- analysis of epigenomics data.
'RepitoolsExamples' -- example data for Repitools.
'FIRMAGene' -- differential splicing using Gene 1.0ST arrays.
'gsmoothr' -- smoothing functions re-written in C.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : R [Filter]
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Activity Percentile: 0.00
Registered: 2009-05-08 21:57 |
5. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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- Development Status : 3 - Alpha [Filter]
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- Environment : Other Environment [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-23 21:21 |
6. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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- Development Status : 6 - Mature [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Environmetrics [Filter]
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Activity Percentile: 0.00
Registered: 2021-07-15 19:48 |
7. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Tcl [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Activity Percentile: 0.00
Registered: 2008-02-20 20:34 |
8. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-05 14:30 |
9. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2019-08-02 18:19 |
10. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2013-01-17 23:06 |
11. Atlas and Analysis - Atlas and Analysis (A2) of pathways (curated)
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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Activity Percentile: 0.00
Registered: 2018-01-19 16:21 |
12. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
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- Development Status : 5 - Production/Stable [Filter]
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- Environment : Win32 (MS Windows) [Filter]
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- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
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- Programming Language : Java [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
13. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Regression Models [Filter]
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Activity Percentile: 0.00
Registered: 2009-08-22 09:52 |
14. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Development Status : 5 - Production/Stable [Filter]
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- Intended Audience : End Users/Desktop [Filter]
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- Natural Language : French [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
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- Topic : Database : R Interfaces [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-28 09:03 |
15. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : BSD License [Filter]
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- Programming Language : R [Filter]
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- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2011-02-02 00:51 |
16. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : Artistic License [Filter]
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Activity Percentile: 0.00
Registered: 2010-09-03 21:34 |
17. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data.
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- Development Status : 4 - Beta [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
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Activity Percentile: 0.00
Registered: 2015-09-02 17:28 |
18. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
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- Development Status : 3 - Alpha [Filter]
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- Natural Language : Spanish [Filter]
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- Programming Language : R [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Time Series [Filter]
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Registered: 2010-08-30 08:56 |
19. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2016-04-01 13:46 |
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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