Software Map
Project Tree
Now limiting view to projects in the following categories:
Operating System :: POSIX :: Linux [Remove This Filter]
Natural Language :: English [Remove This Filter]
Intended Audience :: End Users/Desktop [Remove This Filter]
Development Status :: 4 - Beta [Remove This Filter]
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD. |
- Development Status : 4 - Beta (Now Filtering)
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : Other/Proprietary License [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Computational Physics [Filter]
- Topic : Connectivity [Filter]
- Topic : High Performance Computing : Large Memory [Filter]
|
Registered: 2009-06-17 16:54 |
1. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2012-07-03 03:50 |
2. Symphony in R - An R interface to the SYMPHONY MILP solver. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Natural Language : German [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Optimization : Mathematical Programming : Integer Programming [Filter]
- Topic : Optimization : Mathematical Programming : Linear Programming [Filter]
|
Activity Percentile: 0.00
Registered: 2007-12-17 15:44 |
3. Analysis of multi-electrode array data - Functions for the analysis of spike-trains recorded using multi-electrode arrays. Tools include simple visualisation, movie generation, burst analysis, network spikes and episode detection. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics : Medical Science [Filter]
|
Activity Percentile: 0.00
Registered: 2012-04-07 09:14 |
4. Extreme Values in R (evir) - Extreme Value in R: Functions for extreme value theory, which may be divided into the following groups; exploratory data analysis, block maxima, peaks over thresholds (univariate and bivariate), point processes, gev/gpd distributions. |
- Development Status : 4 - Beta (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Econometrics : Time Series Modelling [Filter]
- Topic : Finance : Risk Management [Filter]
- Topic : Time Series [Filter]
|
Activity Percentile: 0.00
Registered: 2011-03-21 13:20 |
5. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Bioinformatics : Visualization [Filter]
|
Activity Percentile: 0.00
Registered: 2012-07-12 22:01 |
6. grainscape - Create grains of connectivity and minimum planar graph models to calculate effective distances for landscape connectivity at multiple scales.
**Development of this package has moved to GitHub (https://achubaty.github.io/grainscape).** |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Registered: 2012-03-07 12:18 |
7. CorReg - find a structure explaining correlations between covariates and use it to compute linear regression. It provides an efficient new estimator for recursive SEM. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Natural Language : English (Now Filtering)
- Natural Language : French [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Econometrics : Linear Regression Models [Filter]
- Topic : Regression Models [Filter]
- Topic : Robust Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2013-11-14 14:32 |
8. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking. |
- Development Status : 4 - Beta (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications : Gnome [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics [Filter]
- Topic : Multivariate Statistics [Filter]
- Topic : Spatial Data & Statistics : Geostatistics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-08-18 03:20 |
9. Tools for Uplift Modeling - The R Package tools4uplift integrates some tools for exploring and modeling uplift. The content can be separated into the following steps of statistical modeling: quantization, visualization, model selection and model validation. |
- Development Status : 4 - Beta (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Graphics : Plotting [Filter]
- Topic : Machine Learning : Model Selection and Validation [Filter]
- Topic : Regression Models [Filter]
|
Activity Percentile: 0.00
Registered: 2018-08-31 21:23 |
10. move: analyze animal movement data - move is a package that contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyse animal movement data. Move addresses movement ecological questions. |
- Development Status : 4 - Beta (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Natural Language : German [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2012-03-28 07:52 |
11. Analysis of phenological digital imagery - The package phenopix provides functions to process digital images of a vegetation cover, depict greennes index trajectories and extract relevant phenological stages. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Environmetrics [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
|
Activity Percentile: 0.00
Registered: 2014-09-23 08:50 |
12. cran2deb - debianize CRAN - cran2deb automatically converts CRAN packages for R into Debian packages, handling dependency matching and package updates nicely.
|
- Development Status : 4 - Beta (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Environment : No Input/Output (Daemon) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : System Administrators [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Programming Language : Unix Shell [Filter]
- Topic : Other/Nonlisted Topic [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2008-09-11 19:33 |
13. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI. |
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : BSD License [Filter]
- Natural Language : English (Now Filtering)
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-18 10:18 |
14. parallelstructure - Package to provide a R framework to make use of multi-core computers when running analysis in the population genetics software STRUCTURE. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Genetics : Population Genetics [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
|
Activity Percentile: 0.00
Registered: 2013-03-26 16:28 |
15. factorplot - factorplot provides numerical and graphical summaries of factor-level differences in GLMs. It produces all pairwise hypotheses tests with either the exact pairwise difference and variance or user-supplied quasi-variances or floating absolute risks. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Graphics [Filter]
- Topic : Regression Models [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
|
Activity Percentile: 0.00
Registered: 2011-05-30 16:43 |
16. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
|
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Natural Language : German [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-03-05 10:51 |
17. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor. |
- Development Status : 4 - Beta (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
|
Activity Percentile: 0.00
Registered: 2010-04-01 17:54 |
18. Animal - The Animal package is intended as tool for analyzing time coded behavioral observation and other ethological data. The project aims to promote the use of R in the the animal sciences and to provide easy to use functions for the researches in the field. |
- Development Status : 4 - Beta (Now Filtering)
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Finance : Data and Date Management [Filter]
|
Activity Percentile: 0.00
Registered: 2009-03-25 08:04 |
19. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. |
- Development Status : 4 - Beta (Now Filtering)
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop (Now Filtering)
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : QTL Mapping [Filter]
|
Activity Percentile: 0.00
Registered: 2009-10-07 19:54 |
54 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>