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0. RMVL - Mappable vector library provides convenient way to access large datasets on solid state drives. This bypasses limitation of physical memory size as well as limited bandwidth of database interfaces. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface. The data is memory mapped into R and then accessed using usual R list and array subscription operators. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as standalone C library. libMVL has simple C API making it easy to interchange of datasets with outside programs.

Development Status : 3 - Alpha [Filter]
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License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
Operating System : OS Independent [Filter]
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Programming Language : R [Filter]
Topic : Database [Filter]
Topic : High Performance Computing : Large Memory [Filter]
Topic : High Performance Computing : Parallel Computing [Filter]

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Registered: 2021-08-19 02:16

1. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
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Programming Language : R [Filter]
Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]

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Registered: 2011-02-18 14:08

2. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples. Currently hosted packages: csSAM and CellMix packages.

Intended Audience : Developers [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics [Filter]
Topic : Software Development [Filter]

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Registered: 2013-04-11 08:27

3. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) (Now Filtering)
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Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Database [Filter]

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Registered: 2014-05-31 04:36