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16 projects in result set.
0. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : BSD License [Filter]
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- Programming Language : R [Filter]
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Registered: 2011-02-02 00:51 |
1. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2011-09-26 05:04 |
2. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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Registered: 2013-01-17 23:06 |
3. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R |
- Development Status : 4 - Beta [Filter]
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Registered: 2012-08-22 01:29 |
4. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition. |
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- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
5. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association. |
- Development Status : 4 - Beta [Filter]
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- Programming Language : Fortran [Filter]
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Registered: 2012-08-10 08:48 |
6. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data. |
- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : Russian [Filter]
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- Programming Language : Java [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Registered: 2010-10-20 17:09 |
7. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour. |
- Development Status : 3 - Alpha [Filter]
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- Natural Language : Spanish [Filter]
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- Programming Language : R [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Time Series [Filter]
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Registered: 2010-08-30 08:56 |
8. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Programming Language : R [Filter]
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Registered: 2010-09-03 21:34 |
9. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed. |
- Development Status : 4 - Beta [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Marketing & Business Analytics [Filter]
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Registered: 2010-05-06 10:59 |
10. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer. |
- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-01-08 10:31 |
11. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp |
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- Natural Language : German [Filter]
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Registered: 2013-05-29 18:34 |
12. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/ |
- Development Status : 3 - Alpha [Filter]
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Registered: 2009-05-19 20:01 |
13. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2008-07-23 21:21 |
14. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis. |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2009-11-20 09:49 |
15. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study. |
- Development Status : 4 - Beta [Filter]
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Registered: 2011-08-05 14:30 |