Software Map

Project Tree

Project Tree

Now limiting view to projects in the following categories:
Programming Language :: R [Remove This Filter]
Operating System :: MacOS [Remove This Filter]

Environment > Console (Text Based)

Curses (0 project)
Newt (0 project)

Browse By:

53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>

0. R/GNU Linear Programming Kit Interface - GLPK is an open source software for solving large-scale linear programming (LP), mixed integer linear programming (MILP) and other related problems. Rglpk provides a high level interface to R for solving LP/MILP problems.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : German [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Optimization : Mathematical Programming : Boolean Programming [Filter]
Topic : Optimization : Mathematical Programming : Integer Programming [Filter]
Topic : Optimization : Mathematical Programming : Linear Programming [Filter]

Activity Percentile: 39.29

Registered: 2007-11-27 09:48

1. STOPS - Methods that fit nonlinear distance transformations in multidimensional scaling and trade-off the fit with structure considerations to find optimal parameters.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Multivariate Statistics : Principal Coordinates / Scaling Methods [Filter]
Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]

Activity Percentile: 17.86

Registered: 2015-02-12 00:09

2. BayesSurv - This package estimates mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft [Filter]
Operating System : Other OS [Filter]
Programming Language : R (Now Filtering)
Topic : Bayesian Statistics : Specific Model Fitting [Filter]

Activity Percentile: 0.00

Registered: 2011-06-08 10:38

3. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : QTL Mapping [Filter]

Activity Percentile: 0.00

Registered: 2009-10-07 19:54

4. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Fortran [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics [Filter]
Topic : High Performance Computing [Filter]
Topic : Machine Learning [Filter]

Activity Percentile: 0.00

Registered: 2012-08-10 08:48

5. Test for point containment in polyhedron - This project provides a function to test whether a point is contained within a closed three-dimensional polyhedron, defined by a triangular mesh. A two-dimensional version for polygons is also provided.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Environment : Other Environment [Filter]
Environment : Win32 (MS Windows) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Chemoinformatics [Filter]
Topic : Graphical Models [Filter]
Topic : Spatial Data & Statistics [Filter]

Activity Percentile: 0.00

Registered: 2010-04-25 17:27

6. X-METRIC Inventory Optimizations - Multi-Echelon Techniques for Recoverable Item Control and its variants MOD-METRIC, VARI-METRIC and related extensions

Development Status : 1 - Planning [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Optimization [Filter]

Activity Percentile: 0.00

Registered: 2013-08-24 22:00

7. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Medical Science [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-03-23 10:20

8. openrepgrid - The openrepgrid package provides means for numerical analysis and high-quality graphical repesentation of repertory grids - a data collection method used in psychological research.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft [Filter]
Programming Language : R (Now Filtering)
Topic : Multivariate Statistics : Visualising Multivariate Data : Graphical Procedures [Filter]
Topic : Social Sciences [Filter]

Activity Percentile: 0.00

Registered: 2010-10-27 15:55

9. umx: A helper library for SEM in OpenMx - umx provides functions making it easy to build, run, modify, and report the results of Structural Equation Models (SEM) using OpenMx. Examples include setting start values: umxStart(); labels: umxLabel(); and reporting; umxSummary().

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : Artistic License [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : BSD [Filter]
Programming Language : R (Now Filtering)
Topic : Genetics [Filter]
Topic : Multivariate Statistics [Filter]
Topic : Optimization : General Purpose Continuous Solvers [Filter]

Activity Percentile: 0.00

Registered: 2013-08-28 13:52

10. Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods

Development Status : 1 - Planning [Filter]
Development Status : 2 - Pre-Alpha [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Environmetrics [Filter]
Topic : Spatial Data & Statistics : Ecological Analysis [Filter]

Registered: 2011-01-24 12:50

11. labeltodendro - This package converts labels to a dendrogram and can be used to summarize groupings achieved by Markov chain Monte Carlo clustering.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]
Topic : Machine Learning : Bayesian Methods [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 09:38

12. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 10:01

13. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : POSIX : Linux [Filter]
Programming Language : Perl [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2013-11-21 21:46

14. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.
Environment : Console (Text Based) [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : MacOS (Now Filtering) Operating System : POSIX : Linux [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter] Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2013-12-19 15:12

15. Composite Likelihood for Random Fields - Composite-Likelihood based methods for Random Fields.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Environmetrics [Filter]
Topic : Multivariate Statistics : Multivariate Distributions [Filter]
Topic : Spatial Data & Statistics [Filter]

Activity Percentile: 0.00

Registered: 2010-02-08 16:57

16. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Computational Physics [Filter]
Topic : Connectivity [Filter]
Topic : High Performance Computing : Large Memory [Filter]

Registered: 2009-06-17 16:54

17. Soil water - The project has now moved to GitHub: https://github.com/julienmoeys/soilwater

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Environmetrics [Filter]

Activity Percentile: 0.00

Registered: 2010-08-17 21:13

18. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Genetics : Phylogenetics [Filter]
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-06-14 14:51

19. getMODIS - The "getMODIS" package is not further developed. Please install the "MODIS" package instead!

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]
Topic : Time Series [Filter]

Registered: 2011-08-10 11:10

53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>