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61 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. qsaR in R - This project aims at building a flexible framework for working with QSAR in R. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
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- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
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- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Chemoinformatics [Filter]
- Topic : Machine Learning [Filter]
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Registered: 2012-10-22 23:24 |
1. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence. |
- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Genetics [Filter]
- Topic : Software Development [Filter]
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Registered: 2016-04-21 23:06 |
2. yags: modular GEE solver - yags is a modular solver for generalized estimating equations. |
- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Multivariate Statistics : Linear Models [Filter]
- Topic : Robust Statistics [Filter]
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Registered: 2009-01-04 12:17 |
3. TreeHotspots - Classification trees can identify multiple clusters at many different scales at various angles.
We find "hotspots", i.e. regions of high and low densities or rates w.r.t. some baseline. |
- Development Status : 3 - Alpha [Filter]
- Environment : Win32 (MS Windows) [Filter]
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- License : Public Domain [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Cluster Analysis : Partitioning Clustering [Filter]
- Topic : Spatial Data & Statistics : Disease Mapping and Areal Data Analysis [Filter]
- Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
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Registered: 2016-03-16 13:24 |
4. Finite Mixure of AFT and FMR models - FMRS package provides estimation and variable selection in Finite Mixture of Accelerated Failure Time Regression (FMAFTR) and Finite Mixture of Regression (FMR) models with a large number of covariates and/or right censoring and heterogeneous structure. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Machine Learning : Model Selection and Validation [Filter]
- Topic : Regression Models [Filter]
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Registered: 2016-03-07 02:31 |
5. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network. |
- Development Status : 6 - Mature [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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Registered: 2014-10-23 15:21 |
6. h5R An interface to hdf5 files from R - This project aims to provide a simple read/write interface to HDF 5 files. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Operating System : MacOS [Filter]
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- Programming Language : R [Filter]
- Topic : Connectivity [Filter]
- Topic : High Performance Computing [Filter]
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Registered: 2010-04-09 23:53 |
7. Analysis of phenological digital imagery - The package phenopix provides functions to process digital images of a vegetation cover, depict greennes index trajectories and extract relevant phenological stages. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers (Now Filtering)
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Environmetrics [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2014-09-23 08:50 |
8. general multiple-table data management - Our objective is to develop classes of objects that (1) make handling multiple-table data sets easier and (2) seamlessly integrate with existing R plotting and model-fitting functions; our philosophy is to keep data management and data analysis separate. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : French [Filter]
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- Programming Language : R [Filter]
- Topic : Environmetrics [Filter]
- Topic : Multivariate Statistics : Matrix Manipulations [Filter]
- Topic : Multivariate Statistics : Visualising Multivariate Data : Data Preprocessing [Filter]
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Registered: 2011-07-27 02:07 |
9. arules - Mining Association Rules - Infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules).
arules is now maintained on Github: https://github.com/mhahsler/arules
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Machine Learning [Filter]
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Registered: 2007-05-21 13:55 |
10. seriation - Infrastructure for seriation - Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Seriation is now maintained on githup at http://github.com/mhahsler/seriation |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Operating System : Microsoft : Windows [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2008-02-01 22:32 |
11. greenbrown - greenbrown is a collection of functions to analyse trends, trend changes and phenology in gridded time series like from satellite observations or climate model simulations. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : German [Filter]
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- Programming Language : R [Filter]
- Topic : Spatial Data & Statistics [Filter]
- Topic : Time Series [Filter]
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Registered: 2013-02-27 17:37 |
12. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data. |
- Development Status : 4 - Beta [Filter]
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Registered: 2014-11-28 09:55 |
13. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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Registered: 2016-04-01 13:46 |
14. Modelling Peaks Over Threshold - The project consists in developing functions for peaks over threshold modeling. Most of results come from the extreme value theory (EVT). The EVT is currently extensively used, mostly in environmental sciences and finance. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- Natural Language : French [Filter]
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- Operating System : POSIX : Linux [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Finance : Risk Management : Value at Risk [Filter]
- Topic : Other/Nonlisted Topic [Filter]
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Registered: 2007-09-21 14:29 |
15. BradleyTerry2 - BradleyTerry2 provides facilities to specify, fit and evaluate Bradley-Terry models for pairwise comparisons. Models may incorporate object-specific, subject-specific, or contest-specific variables, as well as random effects. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
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- Programming Language : R [Filter]
- Topic : Regression Models [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
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Registered: 2010-04-28 10:52 |
16. phrapl - Note: development of phrapl has moved to GitHub: https://github.com/bomeara/phrapl |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers (Now Filtering)
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2011-06-14 14:51 |
17. addendum - Utility functions that should have been in R: easy glmnet, pretty graphing and swift debugging and profiling. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Machine Learning : Model Selection and Validation [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
- Topic : Regression Models [Filter]
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Registered: 2011-06-17 13:35 |
18. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers (Now Filtering)
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
- Operating System : Microsoft : Windows [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2020-04-25 19:28 |
19. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis |
- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
- Topic : Datasets [Filter]
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Registered: 2014-01-22 14:22 |
61 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>