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158 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Genetics [Filter]
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Registered: 2011-03-23 10:20 |
1. crop - The package crop provides an interface to system tools (on Unix-like operating systems) to crop graphics.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
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- Topic : Graphics : Devices [Filter]
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Registered: 2015-10-18 18:40 |
2. MEET.5.1:Motif Element Estimation Tools - MEET 5.1 is an R-package that includes a set of models, aprox. 550, and tools for the detection of cis-regulatory sequences.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Intended Audience : Other Audience [Filter]
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- Natural Language : Spanish [Filter]
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- Topic : Bioinformatics : Mathematics [Filter]
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Registered: 2011-08-10 14:27 |
3. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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- Development Status : 6 - Mature [Filter]
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- Topic : Database [Filter]
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Registered: 2014-10-23 15:21 |
4. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
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Registered: 2010-01-08 16:59 |
5. Isolation Forest - This package implements an anomaly detection method that detects data-anomalies using binary trees. Using the property that anomalies are more susceptible to isolation, anomalies can be detected as data points which have short expected path lengths.
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- Development Status : 3 - Alpha [Filter]
- Environment : Win32 (MS Windows) [Filter]
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- Topic : Machine Learning : Recursive Partitioning [Filter]
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Registered: 2009-07-14 06:02 |
6. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
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- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2014-02-05 10:27 |
7. BradleyTerry2 - BradleyTerry2 provides facilities to specify, fit and evaluate Bradley-Terry models for pairwise comparisons. Models may incorporate object-specific, subject-specific, or contest-specific variables, as well as random effects.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Regression Models [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
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Registered: 2010-04-28 10:52 |
8. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Registered: 2010-04-01 17:54 |
9. readcsvcolumns - This package provides a single R function called read.csv.columns with which you can read a CSV file. You also need to specify beforehand what type each column is (integers, real values or strings) and you can also mark columns to be ignored.
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- Development Status : 4 - Beta [Filter]
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Registered: 2014-12-31 12:19 |
10. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Cluster Analysis [Filter]
- Topic : Spatial Data & Statistics [Filter]
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Registered: 2015-07-04 09:37 |
11. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Graphical Models [Filter]
- Topic : Time Series [Filter]
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Registered: 2011-06-10 12:24 |
12. Analysis of multi-electrode array data - Functions for the analysis of spike-trains recorded using multi-electrode arrays. Tools include simple visualisation, movie generation, burst analysis, network spikes and episode detection.
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- Development Status : 4 - Beta [Filter]
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Registered: 2012-04-07 09:14 |
13. TSP - Traveling Salesperson Problem - Basic infrastructure and some algorithms for the traveling salesperson problem (TSP). The package is now maintained on github at http://github.com/mhahsler/TSP
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2007-02-20 12:47 |
14. Request openblender.io API Services - Openblender.io is a platform that provides services such as blending open data, cleansing data and text vectorization, for mention some. This package looks forward to giving access to those services using R. Visit www.openblender.io for more information.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Win32 (MS Windows) [Filter]
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- Programming Language : R [Filter]
- Topic : Connectivity : WWW/HTTP [Filter]
- Topic : Datasets [Filter]
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Registered: 2020-06-22 17:08 |
15. seriation - Infrastructure for seriation - Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Seriation is now maintained on githup at http://github.com/mhahsler/seriation
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- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : C/C\+\+ [Filter]
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- Programming Language : R [Filter]
- Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2008-02-01 22:32 |
16. R-text-to-speech - "Rtts" package will help R users convert text into speech (voice files in .mp3, .flv, and .wav format) by using the APIs offered by (1) Google Translate, (2) ITRI TTS @web and (3) Microsoft Speech API.
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- Development Status : 2 - Pre-Alpha [Filter]
- Environment : X11 Applications : Gnome [Filter]
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- Topic : Text [Filter]
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Registered: 2015-05-22 08:34 |
17. ROI - R Optimization Infrastructure - The project ROI offers an infrastructure package for optimization. Its aim is to facilitate the usage of different mixed integer programming (MIP) solvers by providing a single interface.
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- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : German [Filter]
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- Topic : Optimization : Mathematical Programming [Filter]
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Registered: 2008-11-25 11:36 |
18. Linear quantile mixed models - This project is aimed at developing an R package to fit and analyse quantile regression models with random effects.
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- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Regression Models [Filter]
- Topic : Robust Statistics [Filter]
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Registered: 2012-05-15 16:23 |
19. R-Forge Site Admin - This project contains the R-Forge site itself. Bugs, feature requests regarding R-Forge can be send with the implemented tracker.
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- Development Status : 4 - Beta [Filter]
- Environment : Web Environment [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : System Administrators [Filter]
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- Natural Language : German [Filter]
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- Programming Language : PHP [Filter]
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- Topic : Software Development [Filter]
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Registered: 2007-05-04 09:07 |
158 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
