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53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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- Development Status : 6 - Mature [Filter]
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Activity Percentile: 62.50
Registered: 2021-07-15 19:48 |
1. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 50.00
Registered: 2011-05-13 20:48 |
2. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : French [Filter]
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Activity Percentile: 25.00
Registered: 2008-07-28 09:03 |
3. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
4. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
5. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Fortran [Filter]
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Registered: 2012-08-10 08:48 |
6. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
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Registered: 2008-11-07 19:39 |
7. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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Activity Percentile: 0.00
Registered: 2011-08-19 15:59 |
8. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals.
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2009-08-22 09:52 |
9. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
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- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : Russian [Filter]
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Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
10. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2014-02-03 16:21 |
11. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
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- Development Status : 3 - Alpha [Filter]
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Activity Percentile: 0.00
Registered: 2012-04-18 14:21 |
12. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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Activity Percentile: 0.00
Registered: 2009-05-19 20:01 |
13. Atlas and Analysis - Atlas and Analysis (A2) of pathways (curated)
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Activity Percentile: 0.00
Registered: 2018-01-19 16:21 |
14. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
15. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2010-05-06 10:59 |
16. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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Registered: 2014-05-31 04:36 |
17. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
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- Natural Language : German [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
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Activity Percentile: 0.00
Registered: 2011-05-18 08:28 |
18. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2013-05-29 18:34 |
19. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
53 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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