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Topic :: Bioinformatics :: Statistics [Remove This Filter]

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14 projects in result set.

0. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)

Activity Percentile: 0.00

Registered: 2011-02-18 14:08

1. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures

Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : French [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2009-04-17 15:10

2. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : High Performance Computing : Parallel Computing [Filter]

Activity Percentile: 0.00

Registered: 2009-11-20 16:56

3. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Multivariate Statistics [Filter]	Activity Percentile: 0.00 Registered: 2011-03-07 18:54

4. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.
Environment : Console (Text Based) [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : MacOS [Filter] Operating System : POSIX : Linux [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2013-12-19 15:12

5. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Multiple Testing [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2010-03-21 02:01

6. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows : Windows Vista [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2010-04-01 17:54

7. Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

Activity Percentile: 0.00

Registered: 2016-02-18 15:57

8. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : German [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics [Filter]
Topic : Spatial Data & Statistics [Filter]

Activity Percentile: 0.00

Registered: 2017-08-30 21:22

9. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-11 08:51

10. GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : French [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-07 17:59

11. GenABEL - A suite of packages for statistical genomics
Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Registered: 2009-08-12 17:07

12. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>

Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2009-06-05 00:29

13. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 10:01