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39 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. RHRV - Package for carrying out heart rate variability studies of ECG records |
- Development Status : 6 - Mature [Filter]
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Activity Percentile: 94.44
Registered: 2010-10-14 10:22 |
1. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : OS Independent [Filter]
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
2. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Machine Learning [Filter]
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Activity Percentile: 0.00
Registered: 2012-08-10 08:48 |
3. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry. |
- Development Status : 3 - Alpha [Filter]
- Environment : Other Environment [Filter]
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Activity Percentile: 0.00
Registered: 2011-04-04 14:59 |
4. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Natural Language : Spanish [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Time Series [Filter]
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Activity Percentile: 0.00
Registered: 2010-08-30 08:56 |
5. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters. |
- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : Java [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-19 15:59 |
6. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm |
- Development Status : 5 - Production/Stable [Filter]
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Registered: 2013-01-17 23:06 |
7. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins. |
- Development Status : 4 - Beta [Filter]
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- Topic : Chemoinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2011-05-13 20:48 |
8. NameNeedle - Using Needleman-Wunsch to Match Sample Names |
- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2014-02-03 16:21 |
9. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis. |
- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
10. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs). |
- Development Status : 6 - Mature [Filter]
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Activity Percentile: 0.00
Registered: 2021-07-15 19:48 |
11. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis |
- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
12. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2010-05-14 17:19 |
13. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences. |
- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : French [Filter]
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- Topic : Database : R Interfaces [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-28 09:03 |
14. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp |
- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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Activity Percentile: 0.00
Registered: 2013-05-29 18:34 |
15. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods. |
- Development Status : 2 - Pre-Alpha [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-17 20:46 |
16. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network. |
- Development Status : 6 - Mature [Filter]
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Activity Percentile: 0.00
Registered: 2014-10-23 15:21 |
17. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures. |
- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Activity Percentile: 0.00
Registered: 2014-02-05 10:27 |
18. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution. |
- Development Status : 1 - Planning [Filter]
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Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
19. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals. |
- Development Status : 5 - Production/Stable [Filter]
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- Topic : Regression Models [Filter]
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Activity Percentile: 0.00
Registered: 2009-08-22 09:52 |
39 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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