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Topic > Genetics |
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7 projects in result set.
0. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Programming Language : R [Filter]
- Topic : Bioinformatics [Filter]
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- Topic : Genetics [Filter]
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Registered: 2009-09-17 00:13 |
1. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics [Filter]
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Registered: 2011-10-11 08:51 |
2. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer. |
- Development Status : 2 - Pre-Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Genetics [Filter]
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Registered: 2010-01-08 10:31 |
3. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics [Filter]
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Registered: 2011-09-14 03:27 |
4. Non-Additive Inverses - A package to construct Non-Additive Genetic relatedness matrices and their generalized inverses for inclusion in quantitative genetic analyses using the 'animal model'. |
- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Genetics [Filter]
- Topic : Multivariate Statistics : Linear Models [Filter]
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Registered: 2011-11-10 03:57 |
5. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. |
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Registered: 2013-04-11 08:27 |
6. Statistical analysis of DNA mixtures - Statistical analysis of mixed traces of DNA with artefacts. Features include parameter-fitting, visual diagnostics, evaluation of the likelihood, and genotype prediction. Full functionality requires a licenced copy of Hugin (www.hugin.com). |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Topic : Genetics [Filter]
- Topic : Graphical Models [Filter]
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Registered: 2013-07-07 18:26 |