Software Map
Project Tree
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27 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS. | |
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Activity Percentile: 0.00 Registered: 2009-10-20 01:21 |
1. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs. | |
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Activity Percentile: 0.00 Registered: 2011-03-23 10:20 |
2. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis). | |
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Activity Percentile: 0.00 Registered: 2010-02-24 09:24 |
3. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm. | |
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Activity Percentile: 0.00 Registered: 2011-01-07 17:53 |
4. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters. | |
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Activity Percentile: 0.00 Registered: 2011-08-19 15:59 |
5. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties. | |
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Activity Percentile: 0.00 Registered: 2011-10-11 08:51 |
6. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure. | |
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Activity Percentile: 0.00 Registered: 2013-12-19 15:12 |
7. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp | |
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Activity Percentile: 0.00 Registered: 2013-05-29 18:34 |
8. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages. | |
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Activity Percentile: 0.00 Registered: 2013-04-11 08:27 |
9. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence. | |
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Activity Percentile: 0.00 Registered: 2016-04-21 23:06 |
10. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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Activity Percentile: 0.00 Registered: 2010-03-05 10:51 |
11. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer. | |
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Activity Percentile: 0.00 Registered: 2010-01-08 10:31 |
12. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments | |
Activity Percentile: 0.00 Registered: 2012-04-18 14:21 |
13. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments. | |
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Registered: 2009-06-19 09:14 |
14. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences. | |
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Activity Percentile: 0.00 Registered: 2008-07-28 09:03 |
15. Non-Additive Inverses - A package to construct Non-Additive Genetic relatedness matrices and their generalized inverses for inclusion in quantitative genetic analyses using the 'animal model'. | |
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Activity Percentile: 0.00 Registered: 2011-11-10 03:57 |
16. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files. | |
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Activity Percentile: 0.00 Registered: 2010-01-08 16:59 |
17. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations | |
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Activity Percentile: 0.00 Registered: 2011-02-02 00:51 |
18. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments. | |
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Activity Percentile: 0.00 Registered: 2012-07-01 21:32 |
19. umx: A helper library for SEM in OpenMx - umx provides functions making it easy to build, run, modify, and report the results of Structural Equation Models (SEM) using OpenMx. Examples include setting start values: umxStart(); labels: umxLabel(); and reporting; umxSummary(). | |
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Activity Percentile: 0.00 Registered: 2013-08-28 13:52 |
27 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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