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Topic :: Bioinformatics :: Statistics [Remove This Filter]
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20 projects in result set.
0. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments. |
- Development Status : 4 - Beta [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Genetics [Filter]
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Registered: 2012-07-01 21:32 |
1. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. |
- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
2. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Programming Language : Perl [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2013-11-21 21:46 |
3. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-10-26 14:24 |
4. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject |
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-10-09 02:03 |
5. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model. |
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Registered: 2012-07-03 03:50 |
6. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Natural Language : German [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
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Registered: 2010-03-05 10:51 |
7. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests. |
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Natural Language : French [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2011-10-07 17:59 |
8. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English [Filter]
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- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2012-07-12 22:01 |
9. modEvA - modEvA is an R package for species distribution model evaluation and analysis. |
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English [Filter]
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- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2014-04-04 11:51 |
10. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2007-12-03 15:58 |
11. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Operating System : Microsoft : Windows : Windows Vista [Filter]
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Registered: 2010-04-01 17:54 |
12. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures |
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Natural Language : French [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-04-17 15:10 |
13. Peirce - Illustrate Peirces criterion for rejection of outliers from a normal distribution. |
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- Environment : Other Environment [Filter]
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Registered: 2012-09-07 07:56 |
14. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg> |
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2009-06-05 00:29 |
15. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator. |
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- Natural Language : French [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-07-30 17:27 |
16. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978). |
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- Natural Language : Spanish [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
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Registered: 2015-07-04 09:37 |
17. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven. |
- Development Status : 4 - Beta [Filter]
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- Topic : Numerical Analysis : Prob\. Methods, Simulation and Stochastic Differential Equations [Filter]
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Registered: 2011-11-29 13:02 |
18. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
- Natural Language : English [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bayesian Statistics [Filter]
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Registered: 2011-10-11 08:51 |
19. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function. |
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- Natural Language : German [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Registered: 2017-08-30 21:22 |