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 Topic > Bioinformatics
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63 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2010-06-28 19:28 |
1. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
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- Topic : Bioinformatics (Now Filtering)
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Registered: 2009-11-20 09:49 |
2. Tools for the analysis of genomic data - 'Repitools' -- analysis of epigenomics data.
'RepitoolsExamples' -- example data for Repitools.
'FIRMAGene' -- differential splicing using Gene 1.0ST arrays.
'gsmoothr' -- smoothing functions re-written in C.
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- Development Status : 4 - Beta [Filter]
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Registered: 2009-05-08 21:57 |
3. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Registered: 2014-05-31 04:36 |
4. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : Java [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
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Registered: 2008-07-17 03:57 |
5. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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Registered: 2009-05-19 20:01 |
6. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry.
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- Development Status : 3 - Alpha [Filter]
- Environment : Other Environment [Filter]
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Registered: 2011-04-04 14:59 |
7. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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Registered: 2014-02-03 16:21 |
8. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-08-19 15:59 |
9. Atlas and Analysis - Atlas and Analysis (A2) of pathways (curated)
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2018-01-19 16:21 |
10. QuasiAlign: Efficient Sequence Analysis - Implementations position sensitive p-mer frequency clustering, and efficient alignment-free method
to compare, match and analyze large scale genetic sequences.
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- Topic : Bioinformatics (Now Filtering)
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Registered: 2009-10-12 02:27 |
11. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2008-11-07 19:39 |
12. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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- Development Status : 4 - Beta [Filter]
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Registered: 2009-09-17 00:13 |
13. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
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- Development Status : 3 - Alpha [Filter]
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- Programming Language : R [Filter]
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Registered: 2012-04-18 14:21 |
14. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2013-01-17 23:06 |
15. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.
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- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : BSD License [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
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Registered: 2010-01-18 10:18 |
16. DNA Microarray Datasets - Bioconductor offers GEOquery and ArrayExpress for accessing DNA microarray data in GEO and ArrayExpress. It also offers microarray data packages. This project is an additional container of microarray data packages for depositors who prefer to use R-forge.
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- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Operating System : Microsoft : Windows : Windows Vista [Filter]
- Programming Language : R [Filter]
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Registered: 2010-02-09 15:03 |
17. LncDM(LncRNA Different methylation) - The Different Methylation Sites, Elements and Regions of lncRNA
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Registered: 2016-07-16 06:57 |
18. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
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- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Registered: 2010-10-20 17:09 |
19. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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- Development Status : 6 - Mature [Filter]
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Registered: 2021-07-15 19:48 |
63 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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