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 Topic > Bioinformatics
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63 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. hyperSpec - hyperSpec is a R package to handle hyperspectral data, i.e. spectra plus further information such as spatial location, time, concentrations, etc.
Such data are frequently encountered in Raman, IR, NIR, UV/VIS, NMR, mass spectroscopy, AAS / AES, ...
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- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Chemoinformatics [Filter]
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Registered: 2009-02-23 09:27 |
1. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2011-09-26 05:04 |
2. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
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- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : BSD License [Filter]
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Registered: 2011-02-02 00:51 |
3. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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Registered: 2009-11-20 09:49 |
4. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2011-05-13 20:48 |
5. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2014-01-22 14:22 |
6. Tools for the analysis of genomic data - 'Repitools' -- analysis of epigenomics data.
'RepitoolsExamples' -- example data for Repitools.
'FIRMAGene' -- differential splicing using Gene 1.0ST arrays.
'gsmoothr' -- smoothing functions re-written in C.
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- Development Status : 4 - Beta [Filter]
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Registered: 2009-05-08 21:57 |
7. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : Java [Filter]
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Registered: 2008-07-17 03:57 |
8. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
9. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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- Development Status : 2 - Pre-Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2011-08-17 20:46 |
10. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
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Registered: 2012-08-22 01:29 |
11. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2016-04-01 13:46 |
12. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : French [Filter]
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Registered: 2008-07-28 09:03 |
13. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : Artistic License [Filter]
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Registered: 2010-09-03 21:34 |
14. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2014-11-28 09:55 |
15. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : Spanish [Filter]
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Registered: 2010-08-30 08:56 |
16. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2010-05-14 17:19 |
17. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2008-01-16 22:15 |
18. QuasiAlign: Efficient Sequence Analysis - Implementations position sensitive p-mer frequency clustering, and efficient alignment-free method
to compare, match and analyze large scale genetic sequences.
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- Topic : Bioinformatics (Now Filtering)
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Activity Percentile: 0.00
Registered: 2009-10-12 02:27 |
19. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
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- Development Status : 1 - Planning [Filter]
- Environment : Other Environment [Filter]
- Environment : Win32 (MS Windows) [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
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Registered: 2010-06-14 20:56 |
63 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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