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Topic :: Bioinformatics [Remove This Filter]
60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2009-10-20 01:21 |
1. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2012-11-27 16:51 |
2. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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Registered: 2009-05-19 20:01 |
3. Tools for the analysis of genomic data - 'Repitools' -- analysis of epigenomics data.
'RepitoolsExamples' -- example data for Repitools.
'FIRMAGene' -- differential splicing using Gene 1.0ST arrays.
'gsmoothr' -- smoothing functions re-written in C.
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- Development Status : 4 - Beta [Filter]
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Registered: 2009-05-08 21:57 |
4. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
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- Development Status : 3 - Alpha [Filter]
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- Natural Language : Spanish [Filter]
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- Topic : Time Series [Filter]
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Registered: 2010-08-30 08:56 |
5. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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- Topic : Chemoinformatics [Filter]
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Registered: 2011-05-13 20:48 |
6. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
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- Development Status : 4 - Beta [Filter]
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Registered: 2010-05-06 10:59 |
7. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
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- Natural Language : German [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
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Registered: 2011-05-18 08:28 |
8. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
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- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2014-02-05 10:27 |
9. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : Java [Filter]
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Registered: 2011-08-19 15:59 |
10. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2008-07-23 21:21 |
11. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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- Development Status : 4 - Beta [Filter]
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Registered: 2013-05-29 18:34 |
12. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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- Development Status : 1 - Planning [Filter]
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Registered: 2007-12-05 06:24 |
13. CRImage - CRImage is a package to process and analyze biological images.
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- Development Status : 4 - Beta [Filter]
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Registered: 2010-06-27 11:26 |
14. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2009-11-20 09:49 |
15. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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Registered: 2010-06-28 19:28 |
16. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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Registered: 2016-04-21 23:06 |
17. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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Registered: 2014-05-31 04:36 |
18. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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Registered: 2013-01-21 21:13 |
19. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
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Registered: 2010-09-03 21:34 |
60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
