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Topic :: Bioinformatics [Remove This Filter]
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics (Now Filtering)
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Registered: 2011-09-26 05:04 |
1. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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- Development Status : 5 - Production/Stable [Filter]
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- Environment : X11 Applications [Filter]
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- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Registered: 2009-11-20 09:49 |
2. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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Registered: 2011-05-13 20:48 |
3. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2014-01-22 14:22 |
4. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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- Development Status : 3 - Alpha [Filter]
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- Programming Language : Java [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2008-07-17 03:57 |
5. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
6. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2011-08-17 20:46 |
7. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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Registered: 2016-04-01 13:46 |
8. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Natural Language : French [Filter]
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Registered: 2008-07-28 09:03 |
9. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
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- Development Status : 4 - Beta [Filter]
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Registered: 2014-11-28 09:55 |
10. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
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- Development Status : 3 - Alpha [Filter]
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- Natural Language : Spanish [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2010-08-30 08:56 |
11. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2010-05-14 17:19 |
12. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
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Registered: 2008-01-16 22:15 |
13. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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- Development Status : 4 - Beta [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2008-02-20 20:34 |
14. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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- Natural Language : German [Filter]
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Registered: 2013-05-29 18:34 |
15. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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- Development Status : 6 - Mature [Filter]
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Registered: 2014-10-23 15:21 |
16. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-01-08 10:31 |
17. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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Registered: 2011-08-19 15:59 |
18. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
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Registered: 2012-11-27 16:58 |
19. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2011-04-04 14:59 |
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
