Software Map
Project Tree
Now limiting view to projects in the following categories:
Topic :: Bioinformatics [Remove This Filter]
Operating System :: OS Independent [Remove This Filter]
Natural Language :: English [Remove This Filter]
29 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
0. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
|
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Registered: 2013-01-17 23:06 |
1. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
|
- Development Status : 1 - Planning [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Other/Nonlisted Topic [Filter]
|
Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
2. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
|
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : Artistic License [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2010-09-03 21:34 |
3. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Chemoinformatics [Filter]
|
Activity Percentile: 0.00
Registered: 2011-05-13 20:48 |
4. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
|
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : No Input/Output (Daemon) [Filter]
- Environment : Web Environment [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- License : Other/Proprietary License [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-05-19 20:01 |
5. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
|
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
6. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
|
- Development Status : 2 - Pre-Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-08 10:31 |
7. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Phylogenetics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-11-07 19:39 |
8. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
|
- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Marketing & Business Analytics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-05-06 10:59 |
9. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
|
Registered: 2012-11-27 16:58 |
10. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Registered: 2012-11-27 16:51 |
11. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).
|
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English (Now Filtering)
- Natural Language : German [Filter]
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2010-02-24 09:24 |
12. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS.
|
- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-10-20 01:21 |
13. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
|
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
|
Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
14. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
|
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
15. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
|
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : Java [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
16. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
|
- Intended Audience : Developers [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics [Filter]
- Topic : Software Development [Filter]
|
Activity Percentile: 0.00
Registered: 2013-04-11 08:27 |
17. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
|
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Phylogenetics [Filter]
|
Activity Percentile: 0.00
Registered: 2008-07-23 21:21 |
18. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry.
|
- Development Status : 3 - Alpha [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
|
Activity Percentile: 0.00
Registered: 2011-04-04 14:59 |
19. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
|
- Development Status : 4 - Beta [Filter]
- Environment : Other Environment [Filter]
- Intended Audience : Developers [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English (Now Filtering)
- Operating System : OS Independent (Now Filtering)
- Programming Language : C/C\+\+ [Filter]
- Programming Language : Other [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Database [Filter]
- Topic : Genetics [Filter]
|
Activity Percentile: 0.00
Registered: 2009-09-17 00:13 |
29 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
