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41 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Chemoinformatics [Filter]
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Activity Percentile: 66.67
Registered: 2011-05-13 20:48 |
1. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection. |
- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
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Registered: 2012-11-27 16:51 |
2. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-23 21:21 |
3. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Machine Learning : Random Forests [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
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Activity Percentile: 0.00
Registered: 2011-05-18 08:28 |
4. CRImage - CRImage is a package to process and analyze biological images. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2010-06-27 11:26 |
5. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis. |
- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : X11 Applications [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
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- Programming Language : R [Filter]
- Programming Language : Tcl [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Activity Percentile: 0.00
Registered: 2009-11-20 09:49 |
6. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types. |
- Development Status : 3 - Alpha [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : Java [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
7. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2010-06-28 19:28 |
8. RHRV - Package for carrying out heart rate variability studies of ECG records |
- Development Status : 6 - Mature [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2010-10-14 10:22 |
9. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
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- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
10. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence. |
- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2016-04-21 23:06 |
11. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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Activity Percentile: 0.00
Registered: 2016-04-01 13:46 |
12. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages. |
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2010-05-14 17:19 |
13. Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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- Topic : Machine Learning : Random Forests [Filter]
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Activity Percentile: 0.00
Registered: 2015-09-02 17:28 |
14. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees. |
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Activity Percentile: 0.00
Registered: 2008-11-07 19:39 |
15. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study. |
- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-05 14:30 |
16. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution. |
- Development Status : 1 - Planning [Filter]
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Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
17. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures. |
- Development Status : 2 - Pre-Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Activity Percentile: 0.00
Registered: 2014-02-05 10:27 |
18. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour. |
- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : Spanish [Filter]
- Operating System : OS Independent [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : R [Filter]
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- Topic : Time Series [Filter]
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Activity Percentile: 0.00
Registered: 2010-08-30 08:56 |
19. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods. |
- Development Status : 2 - Pre-Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-17 20:46 |
41 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>