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45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
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Registered: 2013-01-17 23:06 |
1. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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Registered: 2009-11-20 09:49 |
2. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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Registered: 2021-07-15 19:48 |
3. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry.
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Registered: 2011-04-04 14:59 |
4. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis.
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Registered: 2019-08-02 18:19 |
5. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
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Registered: 2008-01-16 22:15 |
6. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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Registered: 2008-07-23 21:21 |
7. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Registered: 2014-01-22 14:22 |
8. RHRV - Package for carrying out heart rate variability studies of ECG records
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Registered: 2010-10-14 10:22 |
9. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals.
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Registered: 2009-08-22 09:52 |
10. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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Registered: 2008-07-28 09:03 |
11. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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Registered: 2012-11-27 16:51 |
12. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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Registered: 2014-02-03 16:21 |
13. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study.
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- Development Status : 4 - Beta [Filter]
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Registered: 2011-08-05 14:30 |
14. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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Registered: 2009-09-17 00:13 |
15. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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Registered: 2012-08-10 08:48 |
16. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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Registered: 2008-02-20 20:34 |
17. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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Registered: 2008-07-17 03:57 |
18. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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Registered: 2011-08-17 20:46 |
19. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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Registered: 2016-04-01 13:46 |
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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