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39 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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- Topic : Chemoinformatics [Filter]
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Activity Percentile: 38.46
Registered: 2011-05-13 20:48 |
1. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-23 21:21 |
2. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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- Development Status : 2 - Pre-Alpha [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-17 20:46 |
3. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : French [Filter]
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Activity Percentile: 0.00
Registered: 2008-07-28 09:03 |
4. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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- Development Status : 4 - Beta [Filter]
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Activity Percentile: 0.00
Registered: 2008-02-20 20:34 |
5. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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- Development Status : 6 - Mature [Filter]
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Activity Percentile: 0.00
Registered: 2021-07-15 19:48 |
6. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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- Development Status : 1 - Planning [Filter]
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Activity Percentile: 0.00
Registered: 2007-12-05 06:24 |
7. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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- Development Status : 4 - Beta [Filter]
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- Natural Language : German [Filter]
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Activity Percentile: 0.00
Registered: 2013-05-29 18:34 |
8. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
9. Model-Free Psychometric Functions - Local linear estimation of psychometric functions. Provides functions for nonparametric estimation of a psychometric function and for estimation of a derived threshold and slope, and their standard deviations and confidence intervals.
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- Development Status : 5 - Production/Stable [Filter]
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- Topic : Regression Models [Filter]
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Activity Percentile: 0.00
Registered: 2009-08-22 09:52 |
10. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- Natural Language : Russian [Filter]
- Operating System : Microsoft : Windows : Windows Vista [Filter]
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Activity Percentile: 0.00
Registered: 2010-10-20 17:09 |
11. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2011-09-26 05:04 |
12. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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- Development Status : 6 - Mature [Filter]
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Activity Percentile: 0.00
Registered: 2014-10-23 15:21 |
13. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
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- Development Status : 2 - Pre-Alpha [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Activity Percentile: 0.00
Registered: 2014-02-05 10:27 |
14. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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Activity Percentile: 0.00
Registered: 2014-02-03 16:21 |
15. RHRV - Package for carrying out heart rate variability studies of ECG records
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- Development Status : 6 - Mature [Filter]
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Activity Percentile: 0.00
Registered: 2010-10-14 10:22 |
16. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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- Programming Language : Java [Filter]
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Activity Percentile: 0.00
Registered: 2011-08-19 15:59 |
17. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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- Development Status : 2 - Pre-Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-08 10:31 |
18. CRImage - CRImage is a package to process and analyze biological images.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2010-06-27 11:26 |
19. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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Activity Percentile: 0.00
Registered: 2010-06-28 19:28 |
39 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
