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 Topic > Bioinformatics
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60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. hyperSpec - hyperSpec is a R package to handle hyperspectral data, i.e. spectra plus further information such as spatial location, time, concentrations, etc.
Such data are frequently encountered in Raman, IR, NIR, UV/VIS, NMR, mass spectroscopy, AAS / AES, ...
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- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
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- Programming Language : R (Now Filtering)
- Topic : Bioinformatics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
- Topic : Chemoinformatics [Filter]
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Activity Percentile: 0.00
Registered: 2009-02-23 09:27 |
1. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : C/C\+\+ [Filter]
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- Topic : Genetics : Phylogenetics [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2008-01-16 22:15 |
2. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2014-02-03 16:21 |
3. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : MacOS [Filter]
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Registered: 2016-04-21 23:06 |
4. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2012-11-27 16:51 |
5. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Natural Language : German [Filter]
- Programming Language : R (Now Filtering)
- Topic : Bioinformatics [Filter]
- Topic : Machine Learning : Random Forests [Filter]
- Topic : Multivariate Statistics : Missing Data [Filter]
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Registered: 2011-05-18 08:28 |
6. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry.
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- Development Status : 3 - Alpha [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2011-04-04 14:59 |
7. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
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- Development Status : 3 - Alpha [Filter]
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Registered: 2012-04-18 14:21 |
8. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
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- Development Status : 2 - Pre-Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2014-02-05 10:27 |
9. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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- Development Status : 5 - Production/Stable [Filter]
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- Programming Language : Java [Filter]
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Registered: 2011-08-19 15:59 |
10. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2011-08-17 20:46 |
11. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2014-05-31 04:36 |
12. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2008-07-23 21:21 |
13. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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- Development Status : 4 - Beta [Filter]
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- Intended Audience : Developers [Filter]
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Registered: 2009-09-17 00:13 |
14. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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- Development Status : 2 - Pre-Alpha [Filter]
- Environment : Console (Text Based) [Filter]
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Registered: 2010-01-08 10:31 |
15. Tools for the analysis of genomic data - 'Repitools' -- analysis of epigenomics data.
'RepitoolsExamples' -- example data for Repitools.
'FIRMAGene' -- differential splicing using Gene 1.0ST arrays.
'gsmoothr' -- smoothing functions re-written in C.
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Registered: 2009-05-08 21:57 |
16. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
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- Development Status : 4 - Beta [Filter]
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Registered: 2010-09-03 21:34 |
17. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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Registered: 2011-05-13 20:48 |
18. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
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- Development Status : 1 - Planning [Filter]
- Environment : Other Environment [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
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Registered: 2010-06-14 20:56 |
19. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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Registered: 2009-12-15 12:39 |
60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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