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0. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data. http://groups.google.com/group/gadaproject
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter]	Activity Percentile: 0.00 Registered: 2010-10-09 02:03

1. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

Development Status : 4 - Beta [Filter]
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Natural Language : German [Filter]
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Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics [Filter]

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Registered: 2010-03-05 10:51

2. Peirce - Illustrate Peirces criterion for rejection of outliers from a normal distribution.

Development Status : 4 - Beta [Filter]
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Registered: 2012-09-07 07:56

3. GenABEL - A suite of packages for statistical genomics
Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter] Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Registered: 2009-08-12 17:07

4. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>

Development Status : 4 - Beta [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2009-06-05 00:29

5. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.

Development Status : 1 - Planning [Filter]
Development Status : 5 - Production/Stable [Filter]
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Natural Language : English [Filter]
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Programming Language : R (Now Filtering)
Topic : Bayesian Statistics : General Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Bioinformatics : Visualization [Filter]

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Registered: 2008-07-24 04:32

6. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Population Genetics [Filter]

Registered: 2012-06-13 23:35

7. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter]	Activity Percentile: 0.00 Registered: 2011-12-05 20:42

8. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

Development Status : 4 - Beta [Filter]
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Topic : Genetics : QTL Mapping [Filter]

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Registered: 2009-10-07 19:54

9. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
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Programming Language : Perl [Filter]
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Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2013-11-21 21:46

10. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : Microsoft : Windows [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter]	Activity Percentile: 0.00 Registered: 2007-12-03 15:58

11. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.

Development Status : 5 - Production/Stable [Filter]
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Natural Language : French [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]

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Registered: 2010-06-25 04:17

12. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.

Development Status : 4 - Beta [Filter]
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Natural Language : French [Filter]
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Programming Language : Fortran [Filter]
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Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : Population Genetics [Filter]

Activity Percentile: 0.00

Registered: 2009-07-30 17:27

13. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter] Topic : Bioinformatics : Visualization [Filter]	Activity Percentile: 0.00 Registered: 2010-03-10 09:59

14. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes.

Development Status : 5 - Production/Stable [Filter]
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License : OSI Approved : Artistic License [Filter]
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Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Machine Learning [Filter]
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

Activity Percentile: 0.00

Registered: 2014-02-03 16:15

15. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Multivariate Statistics : Multivariate Distributions [Filter]
Topic : Multivariate Statistics : Unsupervised Classification [Filter]

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Registered: 2011-05-10 07:45

16. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary conservation.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter]	Activity Percentile: 0.00 Registered: 2010-10-26 14:24

17. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.

Development Status : 4 - Beta [Filter]
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Registered: 2012-07-12 22:01

18. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Programming Language : R (Now Filtering)
Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : High Performance Computing : Grid Computing [Filter]

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Registered: 2009-11-30 09:36

19. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
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Topic : Time Series [Filter]

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Registered: 2011-06-10 12:24

56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>