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56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
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- Development Status : 5 - Production/Stable [Filter]
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Activity Percentile: 70.00
Registered: 2013-08-29 17:48 |
1. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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Registered: 2011-06-10 12:24 |
2. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests.
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- Development Status : 4 - Beta [Filter]
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Registered: 2011-10-07 17:59 |
3. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.
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- Development Status : 4 - Beta [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
4. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.
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Registered: 2012-07-12 22:01 |
5. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.
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Registered: 2010-04-01 17:54 |
6. Peirce - Illustrate Peirces criterion for rejection of outliers from a normal distribution.
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Registered: 2012-09-07 07:56 |
7. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2020-04-25 19:28 |
8. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
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Registered: 2014-02-14 10:16 |
9. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates
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Registered: 2011-09-14 03:27 |
10. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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Registered: 2013-11-21 21:46 |
11. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
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- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
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Registered: 2012-07-01 21:32 |
12. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
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Registered: 2010-04-23 07:05 |
13. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
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Registered: 2012-10-16 20:41 |
14. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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Registered: 2010-10-09 02:03 |
15. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
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Registered: 2016-10-08 19:20 |
16. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.
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Registered: 2011-11-29 13:02 |
17. Customized Gene Set Enrichment Analysis - Customized Gene Set Enrichment Analysis, including GO/KEGG.
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Registered: 2009-07-07 03:54 |
18. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.
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Registered: 2009-10-07 19:54 |
19. McrBC/CHARM DNA methylation analysis - Analysis of DNA methylation microarray data from the McrBC/CHARM platform
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Registered: 2009-12-08 18:22 |
56 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
