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60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 60.00
Registered: 2011-05-13 20:48 |
1. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
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- Development Status : 3 - Alpha [Filter]
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Activity Percentile: 0.00
Registered: 2012-04-18 14:21 |
2. MPAgenomics - This package contains an implementation of the lars algorithm for the lasso and fusion penalization. It works even if the number of covariate is greater than the number of individuals.
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Regression Models [Filter]
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Registered: 2013-04-18 16:20 |
3. SBML Model Package - A collection of SBML Models with some experimental and simulated datasets.
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- Development Status : 4 - Beta [Filter]
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Registered: 2009-12-15 12:39 |
4. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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Registered: 2014-02-03 16:21 |
5. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
- Topic : Optimization [Filter]
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Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
6. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2011-08-17 20:46 |
7. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2013-01-17 23:06 |
8. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
9. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis.
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Registered: 2019-08-02 18:19 |
10. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
11. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Activity Percentile: 0.00
Registered: 2014-01-22 14:22 |
12. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
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Registered: 2012-11-27 16:58 |
13. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 0.00
Registered: 2010-05-06 10:59 |
14. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2010-05-14 17:19 |
15. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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Registered: 2014-05-31 04:36 |
16. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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Registered: 2012-11-27 16:51 |
17. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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Registered: 2009-05-19 20:01 |
18. Tools for the analysis of genomic data - 'Repitools' -- analysis of epigenomics data.
'RepitoolsExamples' -- example data for Repitools.
'FIRMAGene' -- differential splicing using Gene 1.0ST arrays.
'gsmoothr' -- smoothing functions re-written in C.
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Registered: 2009-05-08 21:57 |
19. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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Registered: 2008-07-23 21:21 |
60 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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