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45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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Registered: 2014-02-03 16:21 |
1. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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Registered: 2011-08-17 20:46 |
2. opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
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Registered: 2013-01-17 23:06 |
3. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
4. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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Registered: 2012-11-27 16:58 |
5. COXMEG - COXMEG provides a tool to fit a Cox mixed-effects model, incorporating fast algorithms for genome-wide association analysis.
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Registered: 2019-08-02 18:19 |
6. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Registered: 2014-01-22 14:22 |
7. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
8. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2010-05-14 17:19 |
9. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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Registered: 2012-11-27 16:51 |
10. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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Registered: 2014-05-31 04:36 |
11. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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Registered: 2008-07-23 21:21 |
12. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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Registered: 2013-05-29 18:34 |
13. lefko3: matrix projection models - Project lefko3 is intended to provided utilities to estimate and analyze population matrix projection models (MPMs). Its focus is on the development of historical MPMs, including raw and function-based, but also develops normal, "ahistorical" MPMs, age-by-stage MPMs, and integral projection models (IPMs).
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Registered: 2021-07-15 19:48 |
14. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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Registered: 2008-07-17 03:57 |
15. missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
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- Topic : Machine Learning : Random Forests [Filter]
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Registered: 2011-05-18 08:28 |
16. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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Registered: 2009-11-20 09:49 |
17. CRImage - CRImage is a package to process and analyze biological images.
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Registered: 2010-06-27 11:26 |
18. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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Registered: 2010-01-07 14:13 |
19. High-throughput Screens Analyzer - This project develops functional analysis methods, including gene set enrichment analysis, network analysis, etc, under a unified framework for high-throughput screening data.
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Registered: 2010-06-29 09:33 |
45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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