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39 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures
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Registered: 2009-04-17 15:10 |
1. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Regression Models [Filter]
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Registered: 2013-07-05 08:44 |
2. cvrcalc - A Cardiovascular Risk's Calculator by Scores
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Registered: 2013-08-02 12:18 |
3. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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Registered: 2010-10-09 02:03 |
4. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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Registered: 2013-11-21 21:46 |
5. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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Registered: 2010-10-26 14:24 |
6. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference
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Registered: 2007-12-03 15:58 |
7. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
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Registered: 2011-12-05 20:42 |
8. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
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Registered: 2008-07-24 04:32 |
9. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.
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Registered: 2011-11-29 13:02 |
10. modEvA - modEvA is an R package for species distribution model evaluation and analysis.
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Registered: 2014-04-04 11:51 |
11. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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Registered: 2010-03-05 10:51 |
12. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.
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Registered: 2020-04-25 19:28 |
13. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
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Registered: 2011-03-07 18:54 |
14. The FEST package - Identification of Family Relations using linked markers.
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Registered: 2010-04-13 13:05 |
15. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
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Registered: 2011-10-11 08:51 |
16. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data
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Registered: 2008-10-09 17:22 |
17. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates
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Registered: 2011-09-14 03:27 |
18. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
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Registered: 2010-04-23 07:05 |
19. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.
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Registered: 2010-05-14 17:13 |
39 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
