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11 projects in result set.

0. GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Natural Language : French [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-07 17:59

1. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering) Topic : Multivariate Statistics [Filter]	Activity Percentile: 0.00 Registered: 2011-03-07 18:54

2. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Multiple Testing [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2010-03-21 02:01

3. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Programming Language : C/C\+\+ [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2010-04-01 17:54

4. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Operating System : OS Independent [Filter]
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Programming Language : R (Now Filtering)
Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-11 08:51

5. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
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Programming Language : C/C\+\+ [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 10:01

6. GenABEL - A suite of packages for statistical genomics
Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering) Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Registered: 2009-08-12 17:07

7. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>

Development Status : 4 - Beta [Filter]
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License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2009-06-05 00:29

8. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.

Environment : Console (Text Based) [Filter]
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Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : POSIX : Linux [Filter]
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Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics [Filter]

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Registered: 2013-12-19 15:12

9. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures

Development Status : 4 - Beta [Filter]
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License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Natural Language : French [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Population Genetics [Filter]

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Registered: 2009-04-17 15:10

10. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : German [Filter]
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Programming Language : C/C\+\+ [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2017-08-30 21:22