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133 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs. |
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Registered: 2011-03-23 10:20 |
1. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence. |
- Development Status : 3 - Alpha [Filter]
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Registered: 2016-04-21 23:06 |
2. DHclus - Divisive hierarchical clustering algorithm with automatic determination of components |
- Development Status : 3 - Alpha [Filter]
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- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Partitioning Clustering [Filter]
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Registered: 2012-08-31 12:26 |
3. Classification and Regression Training - The caret packages contain functions for tuning predictive models, pre-processing, variable importance and other tools related to machine learning and pattern recognition. Parallel processing versions of the main package are also included. |
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- Topic : Machine Learning : Model Selection and Validation [Filter]
- Topic : Regression Models [Filter]
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Registered: 2008-06-05 19:31 |
4. RevoExts - RevoExts is a project for open-source, third-party packages extending Revolution Analytics' RevoScaleR. |
- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2011-05-09 17:31 |
5. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486. |
- Development Status : 4 - Beta [Filter]
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Registered: 2013-11-21 21:46 |
6. BradleyTerry2 - BradleyTerry2 provides facilities to specify, fit and evaluate Bradley-Terry models for pairwise comparisons. Models may incorporate object-specific, subject-specific, or contest-specific variables, as well as random effects. |
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Registered: 2010-04-28 10:52 |
7. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs. |
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- Topic : Genetics : QTL Mapping [Filter]
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Registered: 2009-10-07 19:54 |
8. Isolation Forest - This package implements an anomaly detection method that detects data-anomalies using binary trees. Using the property that anomalies are more susceptible to isolation, anomalies can be detected as data points which have short expected path lengths. |
- Development Status : 3 - Alpha [Filter]
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- Topic : Machine Learning : Recursive Partitioning [Filter]
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Registered: 2009-07-14 06:02 |
9. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure. |
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Registered: 2013-12-19 15:12 |
10. Analysis of multi-electrode array data - Functions for the analysis of spike-trains recorded using multi-electrode arrays. Tools include simple visualisation, movie generation, burst analysis, network spikes and episode detection. |
- Development Status : 4 - Beta [Filter]
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Registered: 2012-04-07 09:14 |
11. labeltodendro - This package converts labels to a dendrogram and can be used to summarize groupings achieved by Markov chain Monte Carlo clustering. |
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- Topic : Bioinformatics : Visualization [Filter]
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- Topic : Machine Learning : Bayesian Methods [Filter]
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Registered: 2009-02-18 09:38 |
12. Easy database interface - Simple database interface for SQLite, MySQL and MS Access. It provides functions for easily reading, writing, listing and subsetting tables in SQLite, MySQL and MS Access. easydb is build on top of RSQLite and RODBC. |
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- Topic : Database : R Interfaces [Filter]
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Registered: 2011-08-19 09:26 |
13. Symphony in R - An R interface to the SYMPHONY MILP solver. |
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- Topic : Optimization : Mathematical Programming : Integer Programming [Filter]
- Topic : Optimization : Mathematical Programming : Linear Programming [Filter]
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Registered: 2007-12-17 15:44 |
14. Shrinkage Estimation - `shrink' is an R package for James-Stein-type shrinkage estimation of the parameters of a linear regression model. This is a work in progress jointly with S. Ejaz Ahmed (seahmed at uwindsor dot ca). |
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Registered: 2010-09-04 03:45 |
15. Structural equation modeling - Several SEM related packages are developed for conducting structural equation modeling. |
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- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
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Registered: 2011-09-26 14:13 |
16. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978). |
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Registered: 2015-07-04 09:37 |
17. Soil water - The project has now moved to GitHub: https://github.com/julienmoeys/soilwater |
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Registered: 2010-08-17 21:13 |
18. Eagle for Genome-Wide Association Mappin - The Eagle package is an implementation of multiple-locus association mapping on a genome-wide scale. It can handle inbred or outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. |
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
- Topic : Genetics : QTL Mapping [Filter]
- Topic : High Performance Computing : Parallel Computing [Filter]
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Registered: 2017-07-24 00:36 |
19. ZooImage - ZooImage is a software (based on R and ImageJ) to analyze plankton samples, using image analysis and machine learning techniques. This is the old repository, please, look at https://github.com/SciViews/zooimage for latest version! |
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Registered: 2009-02-18 14:57 |
133 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>