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59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. The FEST package - Identification of Family Relations using linked markers.
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : Perl [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2010-04-13 13:05 |
1. McrBC/CHARM DNA methylation analysis - Analysis of DNA methylation microarray data from the McrBC/CHARM platform
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2009-12-08 18:22 |
2. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : German [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
- Topic : Genetics [Filter]
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Registered: 2010-03-05 10:51 |
3. Customized Gene Set Enrichment Analysis - Customized Gene Set Enrichment Analysis, including GO/KEGG.
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- Development Status : 3 - Alpha [Filter]
- Environment : Win32 (MS Windows) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2009-07-07 03:54 |
4. plsgenomics: PLS analyses for genomics - This package provides routines for PLS-based genomic analyses. It implements PLS methods for classification with microarray and Next Generation Sequencing data, prediction of transcription factor activities from combined ChIP-chip analysis.
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- Development Status : 5 - Production/Stable [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : French [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Projection Methods [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2014-10-30 14:27 |
5. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach.
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2013-07-26 14:26 |
6. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : C/C\+\+ [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2011-10-07 17:59 |
7. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-04-17 15:10 |
8. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : OS Independent [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]
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Registered: 2010-05-14 17:13 |
9. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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Registered: 2010-10-09 02:03 |
10. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
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Registered: 2013-08-29 17:48 |
11. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
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- Development Status : 5 - Production/Stable [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2014-02-14 10:16 |
12. RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
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- Natural Language : Spanish [Filter]
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- Programming Language : Fortran [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
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Registered: 2015-07-04 09:37 |
13. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis : Hierarchical Clustering [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
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Registered: 2009-02-18 10:01 |
14. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-09-06 17:05 |
15. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area.
See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
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Registered: 2010-04-23 07:05 |
16. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.
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- Development Status : 4 - Beta [Filter]
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Registered: 2012-07-12 22:01 |
17. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
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- Development Status : 1 - Planning [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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Registered: 2011-03-07 18:54 |
18. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.
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- Natural Language : French [Filter]
- Operating System : POSIX : Linux [Filter]
- Programming Language : Fortran [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-07-30 17:27 |
19. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : German [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2017-08-30 21:22 |
59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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