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Topic :: Bioinformatics :: Statistics [Remove This Filter]
59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. NewmanOmics - Develop and implement extensions to the Newman studentized range statistic that can be applied to transcriptomic data
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- Development Status : 4 - Beta [Filter]
- Environment : Other Environment [Filter]
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- License : OSI Approved [Filter]
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- Programming Language : Python [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Activity Percentile: 69.23
Registered: 2017-02-15 20:58 |
1. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-10-26 14:24 |
2. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press.
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Console (Text Based) [Filter]
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- Intended Audience : Other Audience [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
- Natural Language : English [Filter]
- Operating System : OS Independent [Filter]
- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2011-02-18 14:08 |
3. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2013-08-29 17:48 |
4. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.
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- Development Status : 3 - Alpha [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Multivariate Distributions [Filter]
- Topic : Multivariate Statistics : Unsupervised Classification [Filter]
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Registered: 2011-05-10 07:45 |
5. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-10-09 02:03 |
6. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
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- Development Status : 1 - Planning [Filter]
- Development Status : 5 - Production/Stable [Filter]
- Intended Audience : Developers [Filter]
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- Natural Language : English [Filter]
- Operating System : MacOS [Filter]
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- Programming Language : R [Filter]
- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2008-07-24 04:32 |
7. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
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- Topic : Numerical Analysis : Prob\. Methods, Simulation and Stochastic Differential Equations [Filter]
- Topic : Other/Nonlisted Topic [Filter]
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Registered: 2011-11-29 13:02 |
8. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics [Filter]
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Registered: 2011-03-07 18:54 |
9. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Machine Learning [Filter]
- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2014-02-03 16:15 |
10. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.
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- Development Status : 3 - Alpha [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Activity Percentile: 0.00
Registered: 2010-09-06 17:05 |
11. GWASBinTests - Bin-based analysis of genome-wide association studies
Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute
p-values (and FDRs) of several association tests.
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- Development Status : 4 - Beta [Filter]
- Development Status : 5 - Production/Stable [Filter]
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- Natural Language : French [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2011-10-07 17:59 |
12. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2010-03-10 09:59 |
13. Peirce - Illustrate Peirces criterion for rejection of outliers from a normal distribution.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : Microsoft : Windows [Filter]
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Registered: 2012-09-07 07:56 |
14. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
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- Development Status : 5 - Production/Stable [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
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Registered: 2014-02-14 10:16 |
15. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.
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- Natural Language : French [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
- Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]
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Registered: 2010-06-25 04:17 |
16. Customized Gene Set Enrichment Analysis - Customized Gene Set Enrichment Analysis, including GO/KEGG.
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- Development Status : 3 - Alpha [Filter]
- Environment : Win32 (MS Windows) [Filter]
- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
- Programming Language : R [Filter]
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Registered: 2009-07-07 03:54 |
17. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
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- Development Status : 4 - Beta [Filter]
- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Design of Experiments & Analysis of Experimental Data [Filter]
- Topic : Genetics [Filter]
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Registered: 2012-07-01 21:32 |
18. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>
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Registered: 2009-06-05 00:29 |
19. The FEST package - Identification of Family Relations using linked markers.
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Programming Language : Perl [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2010-04-13 13:05 |
59 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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