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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
Development Status : 5 - Production/Stable [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2014-02-14 10:16

1. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : German [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2010-03-05 10:51

2. Peirce - Illustrate Peirces criterion for rejection of outliers from a normal distribution.

Development Status : 4 - Beta [Filter]
Environment : Other Environment [Filter]
Intended Audience : Developers [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
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Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)

Activity Percentile: 0.00

Registered: 2012-09-07 07:56

3. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.

Development Status : 3 - Alpha [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics : General Model Fitting [Filter]
Topic : Bioinformatics : Mathematics [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)

Activity Percentile: 0.00

Registered: 2010-09-06 17:05

4. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data Unification of different output formats Quality Control to find problematic reactions Normalisation of data
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Bioinformatics : Visualization [Filter]	Activity Percentile: 0.00 Registered: 2008-10-09 17:22

5. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data. http://groups.google.com/group/gadaproject
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-10-09 02:03

6. IsoGeneGUI - A graphical user interface package to conduct a dose-response analysis of microarray
Development Status : 5 - Production/Stable [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Bioinformatics : Visualization [Filter] Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Registered: 2009-11-04 09:16

7. GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : French [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-07 17:59

8. GenABEL - A suite of packages for statistical genomics
Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]	Registered: 2009-08-12 17:07

9. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
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Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 10:01

10. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics [Filter]

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Registered: 2011-09-14 03:27

11. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
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Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Graphical Models [Filter]
Topic : Time Series [Filter]

Activity Percentile: 0.00

Registered: 2011-06-10 12:24

12. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
Development Status : 4 - Beta [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : Microsoft : Windows [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Design of Experiments & Analysis of Experimental Data [Filter] Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2012-07-01 21:32

13. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Multivariate Distributions [Filter]
Topic : Multivariate Statistics : Unsupervised Classification [Filter]

Activity Percentile: 0.00

Registered: 2011-05-10 07:45

14. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Population Genetics [Filter]

Registered: 2012-06-13 23:35

15. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.
Environment : Console (Text Based) [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : MacOS [Filter] Operating System : POSIX : Linux [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2013-12-19 15:12

16. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
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Programming Language : Perl [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

Activity Percentile: 0.00

Registered: 2013-11-21 21:46

17. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

Activity Percentile: 0.00

Registered: 2011-04-19 11:00

18. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Regression Models [Filter]	Activity Percentile: 0.00 Registered: 2013-07-05 08:44

19. plsgenomics: PLS analyses for genomics - This package provides routines for PLS-based genomic analyses. It implements PLS methods for classification with microarray and Next Generation Sequencing data, prediction of transcription factor activities from combined ChIP-chip analysis.

Development Status : 5 - Production/Stable [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : French [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Projection Methods [Filter]
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

Activity Percentile: 0.00

Registered: 2014-10-30 14:27

48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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