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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures
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- Development Status : 4 - Beta [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-04-17 15:10 |
1. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
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- Development Status : 3 - Alpha [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Regression Models [Filter]
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Registered: 2013-07-05 08:44 |
2. netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach.
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Registered: 2013-07-26 14:26 |
3. cvrcalc - A Cardiovascular Risk's Calculator by Scores
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- Development Status : 5 - Production/Stable [Filter]
- Environment : Win32 (MS Windows) [Filter]
- Environment : X11 Applications [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2013-08-02 12:18 |
4. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data.
http://groups.google.com/group/gadaproject
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- Development Status : 4 - Beta [Filter]
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Registered: 2010-10-09 02:03 |
5. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Perl [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2013-11-21 21:46 |
6. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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- Development Status : 4 - Beta [Filter]
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Registered: 2010-10-26 14:24 |
7. IsoGene - Testing for Trend in Dose-Response Microarray Experiments: a Comparison of Testing Procedures, Multiplicity, and Resampling-Based Inference
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Registered: 2007-12-03 15:58 |
8. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
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- Development Status : 5 - Production/Stable [Filter]
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- License : OSI Approved : Artistic License [Filter]
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- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Cluster Analysis [Filter]
- Topic : Multivariate Statistics [Filter]
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Registered: 2013-08-29 17:48 |
9. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model.
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Registered: 2014-02-03 16:37 |
10. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes.
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- Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]
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Registered: 2014-02-03 16:15 |
11. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
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- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
12. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2011-12-05 20:42 |
13. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
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- Development Status : 1 - Planning [Filter]
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- Topic : Bayesian Statistics : General Model Fitting [Filter]
- Topic : Bioinformatics : Statistics (Now Filtering)
- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2008-07-24 04:32 |
14. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.
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- Development Status : 4 - Beta [Filter]
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- Topic : Numerical Analysis : Prob\. Methods, Simulation and Stochastic Differential Equations [Filter]
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Registered: 2011-11-29 13:02 |
15. modEvA - modEvA is an R package for species distribution model evaluation and analysis.
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- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2014-04-04 11:51 |
16. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.
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- Natural Language : German [Filter]
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Registered: 2010-03-05 10:51 |
17. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2020-04-25 19:28 |
18. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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Registered: 2010-03-10 09:59 |
19. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
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Registered: 2011-03-07 18:54 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
