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14 projects in result set.

0. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics [Filter]

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Registered: 2011-09-14 03:27

1. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Graphical Models [Filter]
Topic : Time Series [Filter]

Activity Percentile: 0.00

Registered: 2011-06-10 12:24

2. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2010-04-01 17:54

3. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal. Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]

Registered: 2010-05-14 17:13

4. ParallABEL - ParallABEL aims to speed up the computation of GWA studies and also simplify parallelization in analysis of this important research area. See http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/index.html for more details.
Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : POSIX : Linux [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-04-23 07:05

5. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

Activity Percentile: 0.00

Registered: 2011-04-19 11:00

6. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Natural Language : English [Filter]
Operating System : OS Independent [Filter]
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Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-11 08:51

7. Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.

Development Status : 3 - Alpha [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Multivariate Distributions [Filter]
Topic : Multivariate Statistics : Unsupervised Classification [Filter]

Activity Percentile: 0.00

Registered: 2011-05-10 07:45

8. msap - The package msap provides a easy way to analyse MSAP (Methylation-Sensible Amplified Polymorphism) data in order to asses epigenetic and genetic differences between groups of samples.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Population Genetics [Filter]

Registered: 2012-06-13 23:35

9. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : QTL Mapping [Filter]

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Registered: 2009-10-07 19:54

10. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 10:01

11. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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Programming Language : Perl [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2013-11-21 21:46

12. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
Development Status : 3 - Alpha [Filter] Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop (Now Filtering) License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics (Now Filtering) Topic : Environmetrics [Filter]	Activity Percentile: 0.00 Registered: 2016-10-08 19:20

13. pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) (Now Filtering)
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Genetics : Multiple Testing [Filter]
Topic : Multivariate Statistics [Filter]

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Registered: 2010-03-21 02:01