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45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

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Registered: 2010-04-01 17:54

1. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data. http://groups.google.com/group/gadaproject
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-10-09 02:03

2. survGenesInterim - Simulation of survival studies based on simulated gene expression level and patient data. Includes functions to generate such data. Resulting error and power rate can be visualized. Can be used for sample size or power estimation when planning a study.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Supervised Classification and Discriminant Analysis [Filter]

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Registered: 2011-04-19 11:00

3. waveTiling - Perform transcriptome analysis from tiling array data by a wavelet-based functional model.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2011-12-05 20:42

4. sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates

Development Status : 5 - Production/Stable [Filter]
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Registered: 2011-09-14 03:27

5. EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
Development Status : 3 - Alpha [Filter] Environment : Console (Text Based) [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Environmetrics [Filter]	Activity Percentile: 0.00 Registered: 2016-10-08 19:20

6. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
Development Status : 4 - Beta [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : Microsoft : Windows [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Design of Experiments & Analysis of Experimental Data [Filter] Topic : Genetics [Filter]	Activity Percentile: 0.00 Registered: 2012-07-01 21:32

7. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal. Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.

Development Status : 5 - Production/Stable [Filter]
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Topic : Machine Learning : Regularized and Shrinkage Methods [Filter]

Registered: 2010-05-14 17:13

8. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
Development Status : 1 - Planning [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : C/C\+\+ [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Multivariate Statistics [Filter]	Activity Percentile: 0.00 Registered: 2011-03-07 18:54

9. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.

Development Status : 4 - Beta [Filter]
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Registered: 2011-11-29 13:02

10. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

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Topic : Genetics : QTL Mapping [Filter]

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Registered: 2009-10-07 19:54

11. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2009-02-18 10:01

12. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data Unification of different output formats Quality Control to find problematic reactions Normalisation of data
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Bioinformatics : Visualization [Filter]	Activity Percentile: 0.00 Registered: 2008-10-09 17:22

13. mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics (Now Filtering)
Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
Topic : Multivariate Statistics : Projection Methods : Canonical Correlation [Filter]

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Registered: 2010-06-25 04:17

14. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary conservation.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-10-26 14:24

15. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.

Development Status : 1 - Planning [Filter]
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Topic : Bayesian Statistics : General Model Fitting [Filter]
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Registered: 2008-07-24 04:32

16. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

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Registered: 2013-11-21 21:46

17. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures

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Registered: 2009-04-17 15:10

18. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

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Registered: 2010-03-05 10:51

19. therese - The purpose of this package is to propose a method for inferring networks from expression data obtained in various experimental condition. The "cLasso" (consensus Lasso) method is implemented.
Development Status : 3 - Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) (Now Filtering) Natural Language : English [Filter] Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Regression Models [Filter]	Activity Percentile: 0.00 Registered: 2013-07-05 08:44

45 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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