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 Topic > Bioinformatics
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29 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. simecol - Ecological Models with R - simecol allows to implement ecological models (ODEs, IBMs, ...) using a template-like object-oriented stucture. It helps to organize scenarios and may also be useful for other areas.
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- Development Status : 4 - Beta [Filter]
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Registered: 2008-02-20 20:34 |
1. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.
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- Development Status : 5 - Production/Stable [Filter]
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Registered: 2008-07-28 09:03 |
2. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2010-08-30 08:56 |
3. XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
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Registered: 2016-04-01 13:46 |
4. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
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Registered: 2016-04-21 23:06 |
5. RHRV - Package for carrying out heart rate variability studies of ECG records
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Registered: 2010-10-14 10:22 |
6. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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Registered: 2014-10-23 15:21 |
7. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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Registered: 2013-05-29 18:34 |
8. CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
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Registered: 2014-05-31 04:36 |
9. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Registered: 2014-01-22 14:22 |
10. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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- Development Status : 1 - Planning [Filter]
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Registered: 2007-12-05 06:24 |
11. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.
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- Programming Language : Java [Filter]
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Registered: 2011-08-19 15:59 |
12. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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- Development Status : 4 - Beta [Filter]
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- Programming Language : Fortran [Filter]
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Registered: 2012-08-10 08:48 |
13. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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- Development Status : 3 - Alpha [Filter]
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Registered: 2009-05-19 20:01 |
14. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
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Registered: 2013-04-11 08:27 |
15. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2009-10-20 01:21 |
16. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2013-01-21 21:13 |
17. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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Registered: 2012-11-27 16:58 |
18. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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- Topic : Multivariate Statistics : Projection Methods : Independent Components [Filter]
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Registered: 2010-01-07 14:13 |
19. MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
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Registered: 2012-04-18 14:21 |
29 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
