Software Map

Project Tree

Project Tree

Now limiting view to projects in the following categories:
Intended Audience :: Developers [Remove This Filter]
Topic :: Bioinformatics [Remove This Filter]
Environment :: Console (Text Based) [Remove This Filter]

Topic > Bioinformatics

Human Machine Interfaces (0 project)
Mathematics (5 project)
Medical Science (15 project)
Statistics (59 project)
Visualization (21 project)

Browse By:

9 projects in result set.

0. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : German [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : Genetics [Filter]
Topic : High Performance Computing [Filter]

Activity Percentile: 0.00

Registered: 2013-05-29 18:34

1. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/

Development Status : 3 - Alpha [Filter]
Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) (Now Filtering)
Environment : No Input/Output (Daemon) [Filter]
Environment : Web Environment [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : Database [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2009-05-19 20:01

2. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.

Environment : Console (Text Based) (Now Filtering)
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

Registered: 2013-01-21 21:13

3. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Fortran [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : High Performance Computing [Filter]
Topic : Machine Learning [Filter]

Activity Percentile: 0.00

Registered: 2012-08-10 08:48

4. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)

Activity Percentile: 0.00

Registered: 2011-09-26 05:04

5. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) (Now Filtering)
Environment : Other Environment [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : Artistic License [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)

Activity Percentile: 0.00

Registered: 2010-09-03 21:34

6. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) (Now Filtering)
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : Spanish [Filter]
Operating System : OS Independent [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : Biostatistics & Medical Statistics [Filter]
Topic : Time Series [Filter]

Activity Percentile: 0.00

Registered: 2010-08-30 08:56

7. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) (Now Filtering)
Environment : X11 Applications [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : BSD License [Filter]
Natural Language : English [Filter]
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : Genetics [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-02-02 00:51

8. mzmatch.R - This package provides integration between the mzMatch/PeakML Java library (and its file formats) and the XCMS library for R. mzMatch is a modular, open source and platform independent data processing pipeline for metabolomics LC/MS data.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) (Now Filtering)
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English [Filter]
Natural Language : Russian [Filter]
Operating System : Microsoft : Windows : Windows Vista [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Java [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics (Now Filtering)
Topic : Design of Experiments & Analysis of Experimental Data [Filter]

Activity Percentile: 0.00

Registered: 2010-10-20 17:09