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17 projects in result set.

0. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
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Registered: 2011-10-11 08:51

1. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations

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Registered: 2011-02-02 00:51

2. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Development Status : 3 - Alpha [Filter] Development Status : 4 - Beta [Filter] Intended Audience : Developers (Now Filtering) Intended Audience : End Users/Desktop [Filter] Natural Language : English (Now Filtering) Operating System : OS Independent [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics [Filter] Topic : Genetics (Now Filtering)	Activity Percentile: 0.00 Registered: 2009-10-20 01:21

3. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2009-06-19 09:14

4. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

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Registered: 2013-05-29 18:34

5. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.

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Registered: 2011-08-19 15:59

6. CNVScope - CNVScope: Visually exploring copy number aberrations in cancer genomes

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Registered: 2019-07-16 15:34

7. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

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Registered: 2010-01-08 16:59

8. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples. Currently hosted packages: csSAM and CellMix packages.

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Registered: 2013-04-11 08:27

9. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

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Registered: 2010-03-05 10:51

10. RFLPtools - RFLPtools provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).

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Registered: 2010-02-24 09:24

11. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

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Registered: 2011-01-07 17:53

12. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/

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Registered: 2009-05-19 20:01

13. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.

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Registered: 2008-07-28 09:03

14. Statistical analysis of DNA mixtures - Statistical analysis of mixed traces of DNA with artefacts. Features include parameter-fitting, visual diagnostics, evaluation of the likelihood, and genotype prediction. Full functionality requires a licenced copy of Hugin (www.hugin.com).

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Registered: 2013-07-07 18:26

15. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.

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Registered: 2016-04-21 23:06

16. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.

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Registered: 2009-09-17 00:13