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Intended Audience > End Users/Desktop

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19 projects in result set.

0. seurat - GUI for interactive and integrative analysis of omics data

Development Status : 3 - Alpha [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Natural Language : German [Filter]
Operating System : OS Independent [Filter]
Programming Language : Java [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Cluster Analysis [Filter]
Topic : Graphical User Interface [Filter]

Activity Percentile: 0.00

Registered: 2009-05-08 10:12

1. SVGMapping - SVGMapping aims at displaying experimental data on custom-made SVG images. Data are used to alter attributes of graphical shapes: colors, opacity. Tooltips and redirection URLs can be added when viewed within a compatible browser.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : BSD License [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Graphics : Plotting [Filter]

Activity Percentile: 0.00

Registered: 2011-05-26 08:52

2. visualization of a correlation matrix - corrplot is a visualization of a correlation matrix, test for correlation, and other visualization methods about correlation.

Development Status : 2 - Pre-Alpha [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]

Activity Percentile: 0.00

Registered: 2009-06-22 14:55

3. ordijuice - ordijuice is package for unconstrained ordination of vegetation data, running under JUICE software (http://www.sci.muni.cz/botany/juice/). Generally a wrapper for functions from package vegan, with some additional functions.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : Public Domain [Filter]
Natural Language : English (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 08:49

4. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments.

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Bioinformatics : Visualization (Now Filtering)

Activity Percentile: 0.00

Registered: 2010-03-10 09:59

5. supraHex - supraHex devises a supra-hexagonal map, a giant hexagon on a 2D map grid consisting of smaller hexagons, for self-organising tabular omics data, carrying out gene clustering, sample correlation and multilayer omics data comparisons.

Development Status : 6 - Mature [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Cluster Analysis [Filter]

Activity Percentile: 0.00

Registered: 2013-12-05 13:55

6. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

Development Status : 4 - Beta [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Natural Language : German [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2010-03-05 10:51

7. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data Unification of different output formats Quality Control to find problematic reactions Normalisation of data
Development Status : 2 - Pre-Alpha [Filter] Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Programming Language : R (Now Filtering) Topic : Bioinformatics : Statistics [Filter] Topic : Bioinformatics : Visualization (Now Filtering)	Activity Percentile: 0.00 Registered: 2008-10-09 17:22

8. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.

Development Status : 4 - Beta [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Statistics [Filter]
Topic : Bioinformatics : Visualization (Now Filtering)

Activity Percentile: 0.00

Registered: 2012-07-12 22:01

9. labeltodendro - This package converts labels to a dendrogram and can be used to summarize groupings achieved by Markov chain Monte Carlo clustering.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Cluster Analysis : Model-based Clustering [Filter]
Topic : Machine Learning : Bayesian Methods [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 09:38

10. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2010-01-08 16:59

11. data management R Tools - The "dmRTools" package is collection of functions can be used in a clinical trials data management system.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Operating System : POSIX : SunOS/Solaris [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Medical Science [Filter]
Topic : Bioinformatics : Visualization (Now Filtering)

Activity Percentile: 0.00

Registered: 2011-10-10 21:38

12. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.

Development Status : 1 - Planning [Filter]
Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
Intended Audience : System Administrators [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bayesian Statistics : General Model Fitting [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Bioinformatics : Visualization (Now Filtering)

Activity Percentile: 0.00

Registered: 2008-07-24 04:32

13. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : Web Environment [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : POSIX : Linux [Filter]
Programming Language : PHP [Filter]
Programming Language : R (Now Filtering)
Programming Language : Unix Shell [Filter]
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Genetics [Filter]
Topic : Graphics : Plotting [Filter]

Registered: 2009-06-19 09:14

14. Patchwork - Allele-specific Copy-number analysis for whole-genome sequenced data in CompleteGenomics or BAM format.
Development Status : 4 - Beta [Filter] Intended Audience : End Users/Desktop [Filter] Intended Audience : Other Audience [Filter] Natural Language : English (Now Filtering) Programming Language : Perl [Filter] Programming Language : Python [Filter] Programming Language : R (Now Filtering) Topic : Bioinformatics : Visualization (Now Filtering)	Activity Percentile: 0.00 Registered: 2011-10-31 13:53

15. CNVScope - CNVScope: Visually exploring copy number aberrations in cancer genomes

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : Web Environment [Filter]
Environment : Win32 (MS Windows) [Filter]
Intended Audience : Developers [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : BSD License [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English (Now Filtering)
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
Operating System : Other OS [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Genetics [Filter]
Topic : High Performance Computing [Filter]

Activity Percentile: 0.00

Registered: 2019-07-16 15:34

16. Mixed-data clustering and visualization - The aim of the project is the development of utilities for clustering subjects and variables of mixed data types. The main purpose is the generation of a mixed-data heatmap.

Development Status : 2 - Pre-Alpha [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Graphics : Plotting [Filter]

Activity Percentile: 0.00

Registered: 2016-02-25 15:54

17. Cytangle - Analyze single cell mass cytometry data

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : Artistic License [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Cluster Analysis [Filter]
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2016-10-26 12:51

18. Multivariate Projection Methods - mpm is an R package by Paul Lewi and Luc Wouters for exploratory multivariate analysis of large data matrices, such as gene expression data from microarray experiments.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : Win32 (MS Windows) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : End Users/Desktop [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R (Now Filtering)
Topic : Bioinformatics : Visualization (Now Filtering)
Topic : Multivariate Statistics : Correspondence Analysis [Filter]
Topic : Multivariate Statistics : Projection Methods [Filter]

Activity Percentile: 0.00

Registered: 2008-01-29 14:46