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23 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. modEvA - modEvA is an R package for species distribution model evaluation and analysis.

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Registered: 2014-04-04 11:51

1. GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.

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Registered: 2011-10-07 17:59

2. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

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Registered: 2010-03-05 10:51

3. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary conservation.
Development Status : 4 - Beta (Now Filtering) Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-10-26 14:24

4. GADA - GADA is an R package for fast and accurate method for detecting copy number alterations (CNA) from array data. http://groups.google.com/group/gadaproject
Development Status : 4 - Beta (Now Filtering) Intended Audience : End Users/Desktop [Filter] License : OSI Approved : GNU General Public License (GPL) [Filter] Natural Language : English (Now Filtering) Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering)	Activity Percentile: 0.00 Registered: 2010-10-09 02:03

5. smoothtest - This package implements a whole series of smooth tests that serve as goodness of fit tests for univariate data against a whole range of distributions. The tests can be performed both parametric and data driven.

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Registered: 2011-11-29 13:02

6. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

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Registered: 2010-04-01 17:54

7. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

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Registered: 2011-10-11 08:51

8. plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.

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Registered: 2012-07-01 21:32

9. Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model.

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Registered: 2012-07-03 03:50

10. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.

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Registered: 2012-07-12 22:01

11. Tools for analysis of epigenomic data - Useful functions for quality assessment, visualization, summarization and statistical analysis of epigenomics experiments.

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Registered: 2010-03-10 09:59

12. Peirce - Illustrate Peirces criterion for rejection of outliers from a normal distribution.

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Registered: 2012-09-07 07:56

13. HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
Development Status : 4 - Beta (Now Filtering) Intended Audience : End Users/Desktop [Filter] License : OSI Approved : Artistic License [Filter] Natural Language : English (Now Filtering) Programming Language : R [Filter] Topic : Bioinformatics : Statistics (Now Filtering) Topic : Biostatistics & Medical Statistics [Filter]	Activity Percentile: 0.00 Registered: 2012-10-16 20:41

14. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.

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Registered: 2009-11-30 09:36

15. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

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Registered: 2009-10-07 19:54

16. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.

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Registered: 2009-07-30 17:27

17. HaarSeg [MOVED TO GITHUB] - This repository and its package has been moved to <https://github.com/HenrikBengtsson/HaarSeg>

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Registered: 2009-06-05 00:29

18. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

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Registered: 2013-11-21 21:46

19. The forensim package - The forensim package for the R environment provides statistical tools dedicated to the interpretation of forensic DNA mixtures

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Registered: 2009-04-17 15:10

23 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>