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48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CENTIPEDE - CENTIPEDE is a probabilistic framework that integrates tissue-specific experimental data such as histone modifications and DNaseI cleavage patterns with genomic information such as gene annotation and evolutionary
conservation.
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Registered: 2010-10-26 14:24 |
1. cvrcalc - A Cardiovascular Risk's Calculator by Scores
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Registered: 2013-08-02 12:18 |
2. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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Registered: 2013-11-21 21:46 |
3. OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
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Registered: 2013-08-29 17:48 |
4. UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model.
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Registered: 2014-02-03 16:37 |
5. Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes.
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Registered: 2014-02-03 16:15 |
6. modEvA - modEvA is an R package for species distribution model evaluation and analysis.
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Registered: 2014-04-04 11:51 |
7. qPCR - qPCR is a method for detecting and quantifying mRNA from a given sample. This project attempts to solve 3 main problems in analysis of qPCR data
Unification of different output formats
Quality Control to find problematic reactions
Normalisation of data
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Registered: 2008-10-09 17:22 |
8. ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt.
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Registered: 2008-08-21 11:49 |
9. Quantitative Fitness Analysis - QFA is an experimental and computational methodology for estimation of the fitnesses of arrayed microbial cultures growing on solid agar. Methods for estimating fitnesses, fitness variability and genetic interaction strengths are included.
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Registered: 2010-09-06 17:05 |
10. IsoGeneGUI - A graphical user interface package to conduct a dose-response analysis of microarray
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Registered: 2009-11-04 09:16 |
11. GeneticMediation - GeneticMediation provides methods for conducting causal mediation analysis on data from the ROSMAP study. It also provides methods for cleaning, matching, and preparing the data for analysis.
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Registered: 2020-04-25 19:28 |
12. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.
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Registered: 2009-11-30 09:36 |
13. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.
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Registered: 2011-10-11 08:51 |
14. Range Correlations - Methods from spatial statistics are adapted and implemented to be used for assessing marginal and partial correlations in range and site data (positional data) along genomes based on the Bioconductor package GenomicRanges.
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Registered: 2011-03-07 18:54 |
15. MeDiChI - R package implementing model based deconvolution of ChIP-chip (transcription factor binding) data, as published in Bioinformatics journal.
Please visit http://baliga.systemsbiology.net/medichi for source code, instructions, and R package downloads.
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Registered: 2010-05-14 17:13 |
16. NewmanOmics - Develop and implement extensions to the Newman studentized range statistic that can be applied to transcriptomic data
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Registered: 2017-02-15 20:58 |
17. Data Analysis Using Regression - R functions for processing lm, glm, and polr outputs. This is a lite version of arm that does not deal with mer class.
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Registered: 2008-07-24 04:32 |
18. SMfSB - R code associated with the second and third editions of the book Stochastic Modelling for Systems Biology, by Darren J Wilkinson, published by Chapman & Hall/CRC Press.
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Registered: 2011-02-18 14:08 |
19. ddepn - DDEPN (Dynamic Deterministic Effects Propagation Networks): Infer signalling networks for high-throughput genomic or proteomic timecourse data, generated after external perturbation like activation or inhibition of network nodes.
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Registered: 2011-06-10 12:24 |
48 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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