Software Map

Project Tree

Project Tree

Now limiting view to projects in the following categories:
Natural Language :: English [Remove This Filter]
Intended Audience :: End Users/Desktop [Remove This Filter]
Intended Audience :: Developers [Remove This Filter]
Topic :: Genetics [Remove This Filter]

Intended Audience > End Users/Desktop

Browse By:

15 projects in result set.

0. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples. Currently hosted packages: csSAM and CellMix packages.

Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics (Now Filtering)
Topic : Software Development [Filter]

Activity Percentile: 0.00

Registered: 2013-04-11 08:27

1. CNVScope - CNVScope: Visually exploring copy number aberrations in cancer genomes

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : Web Environment [Filter]
Environment : Win32 (MS Windows) [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : BSD License [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English (Now Filtering)
Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
Operating System : Other OS [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics (Now Filtering)
Topic : High Performance Computing [Filter]

Activity Percentile: 0.00

Registered: 2019-07-16 15:34

2. SeqinR: Biological Sequences in R - The seqinR package for the R environment contains utilities to retrieve and analyse biological sequences.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Natural Language : French [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Database : R Interfaces [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2008-07-28 09:03

3. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/

Development Status : 3 - Alpha [Filter]
Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : No Input/Output (Daemon) [Filter]
Environment : Web Environment [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
License : Other/Proprietary License [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Database [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2009-05-19 20:01

4. Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.

Development Status : 3 - Alpha [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics (Now Filtering)
Topic : Software Development [Filter]

Activity Percentile: 0.00

Registered: 2016-04-21 23:06

5. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
Intended Audience : Other Audience [Filter]
License : OSI Approved : BSD License [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics (Now Filtering)
Topic : Multivariate Statistics [Filter]

Activity Percentile: 0.00

Registered: 2011-02-02 00:51

6. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Natural Language : German [Filter]
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics (Now Filtering)
Topic : High Performance Computing [Filter]

Activity Percentile: 0.00

Registered: 2013-05-29 18:34

7. synbreed - Collection of statistical and genetic methods developed for the synbreed project for synergistic plant and animal breeding.

Development Status : 4 - Beta [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Natural Language : German [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2010-03-05 10:51

8. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : POSIX : Linux [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : Fortran [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Genetics (Now Filtering)
Topic : Graphical Models [Filter]

Activity Percentile: 0.00

Registered: 2011-01-07 17:53

9. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : Web Environment [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : POSIX : Linux [Filter]
Programming Language : PHP [Filter]
Programming Language : R [Filter]
Programming Language : Unix Shell [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics (Now Filtering)
Topic : Graphics : Plotting [Filter]

Registered: 2009-06-19 09:14

10. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Development Status : 3 - Alpha [Filter] Development Status : 4 - Beta [Filter] Intended Audience : Developers (Now Filtering) Intended Audience : End Users/Desktop (Now Filtering) Natural Language : English (Now Filtering) Operating System : OS Independent [Filter] Programming Language : R [Filter] Topic : Bioinformatics [Filter] Topic : Genetics (Now Filtering)	Activity Percentile: 0.00 Registered: 2009-10-20 01:21

11. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : C/C\+\+ [Filter]
Programming Language : R [Filter]
Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2011-10-11 08:51

12. RNetLogo (Discontinued) - RNetLogo is an interface to the agent-based modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.

Development Status : 5 - Production/Stable [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
Intended Audience : Other Audience [Filter]
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : Java [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics [Filter]
Topic : Genetics (Now Filtering)
Topic : Social Sciences [Filter]

Activity Percentile: 0.00

Registered: 2011-08-19 15:59

13. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

Development Status : 5 - Production/Stable [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : MacOS [Filter]
Operating System : Microsoft : Windows [Filter]
Operating System : POSIX : Linux [Filter]
Programming Language : R [Filter]
Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics (Now Filtering)

Activity Percentile: 0.00

Registered: 2010-01-08 16:59

14. Statistical analysis of DNA mixtures - Statistical analysis of mixed traces of DNA with artefacts. Features include parameter-fitting, visual diagnostics, evaluation of the likelihood, and genotype prediction. Full functionality requires a licenced copy of Hugin (www.hugin.com).

Development Status : 4 - Beta [Filter]
Intended Audience : Developers (Now Filtering)
Intended Audience : End Users/Desktop (Now Filtering)
License : OSI Approved : GNU General Public License (GPL) [Filter]
Natural Language : English (Now Filtering)
Operating System : OS Independent [Filter]
Programming Language : R [Filter]
Topic : Genetics (Now Filtering)
Topic : Graphical Models [Filter]

Activity Percentile: 0.00

Registered: 2013-07-07 18:26