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 Topic > Bioinformatics
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43 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Genotype Database Framework - GT.DB is a database framework for efficiently managing genome-wide genotype datasets (i.e. 10^6 or more biallelic markers, 1000s of samples), as well as underlying raw data and complex phenotype data, tightly integrated with R libraries for analysis.
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Registered: 2009-09-17 00:13 |
1. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
2. RHRV - Package for carrying out heart rate variability studies of ECG records
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- Development Status : 6 - Mature [Filter]
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Registered: 2010-10-14 10:22 |
3. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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Registered: 2007-12-05 06:24 |
4. polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
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- Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]
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Registered: 2014-02-05 10:27 |
5. netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
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Registered: 2014-11-28 09:55 |
6. dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
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Registered: 2014-10-23 15:21 |
7. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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Registered: 2009-11-20 09:49 |
8. Animal Intake Behaviour Analysis Package - POO R package for chronological Intake Behaviour Data analysis from test animals. Manage data and predict normal and irregular behaviour.
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Registered: 2010-08-30 08:56 |
9. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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Registered: 2008-07-17 03:57 |
10. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
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Registered: 2013-05-29 18:34 |
11. CRImage - CRImage is a package to process and analyze biological images.
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Registered: 2010-06-27 11:26 |
12. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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Registered: 2010-01-07 14:13 |
13. HTSanalyzeR - HTSanalyzeR provides state-of-the-art analysis methods of pathway and network enrichment for High-Throughput Screens in a unified framework and provides easy-to-understand HTML output
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Registered: 2010-06-28 19:28 |
14. TreEvo - TreEvo (TREE + EVOlution) is a package for approximate Bayesian computation for comparative methods.
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Registered: 2008-07-23 21:21 |
15. High-throughput Screens Analyzer - This project develops functional analysis methods, including gene set enrichment analysis, network analysis, etc, under a unified framework for high-throughput screening data.
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Registered: 2010-06-29 09:33 |
16. dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
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Registered: 2014-01-22 14:22 |
17. Illumina Methylation Analyzer - This IMA package provided a pipeline to analyze Illumina’s 450k Infinium Methylation data. We aimed to find the differential methylated CpG island on user-customized annotated regions as well as individual site by using different methods.
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Registered: 2011-08-17 20:46 |
18. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2010-05-14 17:19 |
19. NameNeedle - Using Needleman-Wunsch to Match Sample Names
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Registered: 2014-02-03 16:21 |
43 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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