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 Topic > Bioinformatics
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26 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. CHNOSZ - A package for thermodynamic modeling in geochemistry and biochemistry,
with functions for equilibrium activity diagrams and chemical affinities of reactions,
supported by an extensive thermodynamic database and group additivity for proteins.
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- Development Status : 4 - Beta [Filter]
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Activity Percentile: 42.86
Registered: 2011-05-13 20:48 |
1. Plant Growth Analysis - Plant Growth Analysis tools for R. It has tools to calculate Relative Growth Rate, Leaf Area Ratio, Leaf Specific Area, Leaf Weight Ratio, Unity Leaf Ratio, Root-Shoot Allometry.
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Registered: 2011-04-04 14:59 |
2. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
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Registered: 2011-02-02 00:51 |
3. RpepXML - R pepXML is an R interface to the pepXML standard for MSMS data identification. It allows pepXML files to be imported into R and for easy manipulation and filtering.
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Registered: 2010-09-03 21:34 |
4. Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
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Registered: 2011-09-26 05:04 |
5. OrgMassSpecR: Organic Mass Spectrometry - Organic/biological mass spectrometry data analysis. The development version of OrgMassSpecR is on GitHub (https://github.com/OrgMassSpec) and the stable version is on CRAN (https://cran.r-project.org/). The R-Forge repository is an archive.
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Registered: 2009-04-28 20:04 |
6. Model-Based Network Analysis - Model-based solutions for network analysis. In particular, probabilistic tools for investigating context-specific activation patterns and network topology.
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Registered: 2010-06-14 20:56 |
7. cMonkey - cMonkey integrated biclustering algorithm for learning co-regulated gene modules.
Please visit http://cmonkey.systemsbiology.net for source code, documentation, and R packages.
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- Topic : Cluster Analysis : Other Cluster Algorithms [Filter]
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Registered: 2010-05-14 17:19 |
8. NMF - Nonnegative Matrix Factorization - This package provides a flexible framework to perform Non-negative Matrix Factorization (NMF).
It implements a set of already published algorithms and seeding methods, and provides a framework
to test, develop and plug new/custom algorithms.
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Activity Percentile: 0.00
Registered: 2010-01-07 14:13 |
9. Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS).
Packages in this project: PSCBS.
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- Development Status : 3 - Alpha [Filter]
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Registered: 2009-10-20 01:21 |
10. LazyMLVA - This project automates assignment of MLVA (Multiple locus VNTR (Variable-Number-of-Tandem-Repeats) Analysis) types from files straight out of the sequencer.
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- Development Status : 2 - Pre-Alpha [Filter]
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Registered: 2010-01-08 10:31 |
11. Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
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Registered: 2012-11-27 16:51 |
12. prepRISA - This package can be used to prepare ARISA data files for multivariate analysis.
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Registered: 2009-11-20 09:49 |
13. SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
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- Topic : Optimization : Mathematical Programming : Global Optimization [Filter]
- Topic : Time Series [Filter]
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Registered: 2012-11-27 16:58 |
14. RMesquite - RMesquite establishes interoperability between Mesquite (http://mesquiteproject.org) and R. It exposes Mesquite methods transparently as R functions that consume and provide native R data types, and converts seamlessly between Java and R data types.
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Activity Percentile: 0.00
Registered: 2008-07-17 03:57 |
15. CellMix - Resources for performing gene expression deconvolution in R, i.e. estimating cell proportions and/or cell-specific gene expression from global gene expression measured in heterogeneous samples.
Currently hosted packages: csSAM and CellMix packages.
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Registered: 2013-04-11 08:27 |
16. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution
This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
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Registered: 2008-11-07 19:39 |
17. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/
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Registered: 2009-05-19 20:01 |
18. TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2010-05-06 10:59 |
19. PhyloConductor - PhyloConductor aims to form a collection of R packages for phylogenetic, comparative, and other evolutionary analysis that is coherent and user-accessible. Initially we focus on comparative phylogenetic methods for the analysis of trait evolution.
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Registered: 2007-12-05 06:24 |
26 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
