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Topic > Genetics

Linkage, LD and Haplotype Mapping (8 project)
Multiple Testing (4 project)
Phylogenetics (20 project)
Population Genetics (12 project)
QTL Mapping (3 project)

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8 projects in result set.

0. casper - casper infers alternative splicing from high-throughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.

Development Status : 4 - Beta [Filter]
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Topic : Bayesian Statistics [Filter]
Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics [Filter]

Activity Percentile: 0.00

Registered: 2011-10-11 08:51

1. genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics [Filter]

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Registered: 2010-01-08 16:59

2. Sublogo dendrograms - Sublogo dendrograms are statistical graphics that reveal correlation in biological sequence alignments.

Development Status : 5 - Production/Stable [Filter]
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Programming Language : PHP [Filter]
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Topic : Bioinformatics : Visualization [Filter]
Topic : Genetics [Filter]
Topic : Graphics : Plotting [Filter]

Registered: 2009-06-19 09:14

3. CNVScope - CNVScope: Visually exploring copy number aberrations in cancer genomes

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Registered: 2019-07-16 15:34

4. aroma.* packages [MOVED TO GITHUB] - This repository and all of its packages have been moved to https://github.com/HenrikBengtsson/

Development Status : 3 - Alpha [Filter]
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Registered: 2009-05-19 20:01

5. cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp

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Registered: 2013-05-29 18:34

6. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

Development Status : 3 - Alpha [Filter]
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Topic : Bayesian Statistics [Filter]
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Registered: 2011-01-07 17:53

7. Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations

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Registered: 2011-02-02 00:51