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32 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Nvidia thrust column-major matrices func - This package provides basic R functions made with a help of nvidia thrust for GPU computation in linux environment. The implementation is based on the NVIDIA CUDA Toolkit 4.0.

Development Status : 2 - Pre-Alpha [Filter]
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Topic : High Performance Computing : Parallel Computing [Filter]

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Registered: 2011-06-10 12:13

1. Estimation and Model Checking for GLSM - This package mainly deals with generalized linear spatial models for estimation, model checking and prediction by using MCMC algorithms.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bayesian Statistics : Specific Model Fitting [Filter]
Topic : Spatial Data & Statistics : Geostatistics [Filter]

Activity Percentile: 0.00

Registered: 2011-08-17 10:52

2. Genome-wide analysis using MOSS - Performs genome-wide analysis of dense SNP array data using the mode oriented stochastic search (MOSS) algorithm in a case-control design. Includes preprocessing of the data from Plink format to the format required by the MOSS algorithm.

Development Status : 3 - Alpha [Filter]
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Programming Language : Fortran [Filter]
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Topic : Bayesian Statistics [Filter]
Topic : Genetics [Filter]
Topic : Graphical Models [Filter]

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Registered: 2011-01-07 17:53

3. Protocol for Adjust & Select Models - This project is about modeling species abundances in communities.

Development Status : 1 - Planning [Filter]
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Registered: 2011-01-18 16:54

4. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking.

Development Status : 4 - Beta [Filter]
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Topic : Bayesian Statistics [Filter]
Topic : Multivariate Statistics [Filter]
Topic : Spatial Data & Statistics : Geostatistics [Filter]

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Registered: 2011-08-18 03:20

5. Test for point containment in polyhedron - This project provides a function to test whether a point is contained within a closed three-dimensional polyhedron, defined by a triangular mesh. A two-dimensional version for polygons is also provided.

Development Status : 4 - Beta [Filter]
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Topic : Chemoinformatics [Filter]
Topic : Graphical Models [Filter]
Topic : Spatial Data & Statistics [Filter]

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Registered: 2010-04-25 17:27

6. Composite Likelihood for Random Fields - Composite-Likelihood based methods for Random Fields.

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Topic : Environmetrics [Filter]
Topic : Multivariate Statistics : Multivariate Distributions [Filter]
Topic : Spatial Data & Statistics [Filter]

Activity Percentile: 0.00

Registered: 2010-02-08 16:57

7. doSMP - The doSMP package provides a parallel backend to the foreach package's %dopar% operator, allowing parallel operation on a symmetric multiprocessor workstation.

Development Status : 5 - Production/Stable [Filter]
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Registered: 2010-11-19 22:27

8. GWAtoolbox - An R-package implemented for genome-wide association studies. The main feature is very vast quality check of data before meta-analysis. It provides an extensive list of quality statistics presented using easy-to-use DHTML and graphical outputs.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Medical Science [Filter]
Topic : Genetics [Filter]

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Registered: 2011-03-23 10:20

9. R/GNU Linear Programming Kit Interface - GLPK is an open source software for solving large-scale linear programming (LP), mixed integer linear programming (MILP) and other related problems. Rglpk provides a high level interface to R for solving LP/MILP problems.

Development Status : 5 - Production/Stable [Filter]
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Topic : Optimization : Mathematical Programming : Boolean Programming [Filter]
Topic : Optimization : Mathematical Programming : Integer Programming [Filter]
Topic : Optimization : Mathematical Programming : Linear Programming [Filter]

Activity Percentile: 0.00

Registered: 2007-11-27 09:48

10. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

Activity Percentile: 0.00

Registered: 2010-04-01 17:54

11. move: analyze animal movement data - move is a package that contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyse animal movement data. Move addresses movement ecological questions.

Development Status : 4 - Beta [Filter]
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Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]

Activity Percentile: 0.00

Registered: 2012-03-28 07:52

12. vcf2geno: reading VCF made easy - Efficiently Read Variant Call Format (VCF) into R

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Topic : Database : R Interfaces [Filter]
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Registered: 2012-08-22 01:29

13. SPRINT: Simple Parallel R INTerface - SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : High Performance Computing : Parallel Computing [Filter]

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Registered: 2009-11-20 16:56

14. LDExplorer - LDExplorer is an R package for the memory and time efficient whole-genome LD based haplotype block recognition.

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Topic : Bioinformatics [Filter]
Topic : Genetics : Linkage, LD and Haplotype Mapping [Filter]

Registered: 2013-01-21 21:13

15. labeltodendro - This package converts labels to a dendrogram and can be used to summarize groupings achieved by Markov chain Monte Carlo clustering.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Visualization [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]
Topic : Machine Learning : Bayesian Methods [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 09:38

16. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

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Registered: 2009-02-18 10:01

17. X-METRIC Inventory Optimizations - Multi-Echelon Techniques for Recoverable Item Control and its variants MOD-METRIC, VARI-METRIC and related extensions

Development Status : 1 - Planning [Filter]
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Topic : Optimization [Filter]

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Registered: 2013-08-24 22:00

18. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.

Development Status : 4 - Beta [Filter]
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Topic : Computational Physics [Filter]
Topic : Connectivity [Filter]
Topic : High Performance Computing : Large Memory [Filter]

Registered: 2009-06-17 16:54

19. Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods

Development Status : 1 - Planning [Filter]
Development Status : 2 - Pre-Alpha [Filter]
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Topic : Spatial Data & Statistics : Ecological Analysis [Filter]

Registered: 2011-01-24 12:50

32 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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