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52 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
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Programming Language : Perl [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Biostatistics & Medical Statistics [Filter]

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Registered: 2013-11-21 21:46

1. Monte Carlo IBD Matrix Estimation - Flexible Monte Carlo Identity-By-Descent (IBD) Matrix Estimation with Within-Line Segregation for Use of Quantitative Trait Loci (QTL) Detection in F2 Intercross Designs.

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics : QTL Mapping [Filter]

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Registered: 2009-10-07 19:54

2. Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.

Environment : Console (Text Based) [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Genetics [Filter]

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Registered: 2013-12-19 15:12

3. Variant Pattern Analyzer - VPA (Variant Pattern Analyzer) is an R package for prioritizing variants with user-specified frequency pattern from multiple study subjects in next generation sequencing study.

Development Status : 4 - Beta [Filter]
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Registered: 2011-08-05 14:30

4. Tools for Uplift Modeling - The R Package tools4uplift integrates some tools for exploring and modeling uplift. The content can be separated into the following steps of statistical modeling: quantization, visualization, model selection and model validation.

Development Status : 4 - Beta [Filter]
Environment : Console (Text Based) [Filter]
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License : OSI Approved : GNU General Public License (GPL) [Filter]
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Topic : Graphics : Plotting [Filter]
Topic : Machine Learning : Model Selection and Validation [Filter]
Topic : Regression Models [Filter]

Activity Percentile: 0.00

Registered: 2018-08-31 21:23

5. Bayesian Biclustering - This package uses a Bayesian spike-and-slab model to construct bidendrograms using log posterior as the natural distance defined by the model and calculates importance using log Bayes factor.

Development Status : 4 - Beta [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

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Registered: 2010-04-01 17:54

6. openrepgrid - The openrepgrid package provides means for numerical analysis and high-quality graphical repesentation of repertory grids - a data collection method used in psychological research.

Development Status : 3 - Alpha [Filter]
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Topic : Multivariate Statistics : Visualising Multivariate Data : Graphical Procedures [Filter]
Topic : Social Sciences [Filter]

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Registered: 2010-10-27 15:55

7. labeltodendro - This package converts labels to a dendrogram and can be used to summarize groupings achieved by Markov chain Monte Carlo clustering.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Visualization [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]
Topic : Machine Learning : Bayesian Methods [Filter]

Activity Percentile: 0.00

Registered: 2009-02-18 09:38

8. bclust - Bayesian clustering with variable selection is a fully automatic clustering method, designed for low-sample-size-high-dimensional situations. This might be regarded as a high-dimensional variant of the mclust package.

Development Status : 5 - Production/Stable [Filter]
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Topic : Bioinformatics : Statistics [Filter]
Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Cluster Analysis : Model-based Clustering [Filter]

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Registered: 2009-02-18 10:01

9. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.

Development Status : 4 - Beta [Filter]
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Programming Language : Fortran [Filter]
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Topic : Bioinformatics [Filter]
Topic : High Performance Computing [Filter]
Topic : Machine Learning [Filter]

Activity Percentile: 0.00

Registered: 2012-08-10 08:48

10. X-METRIC Inventory Optimizations - Multi-Echelon Techniques for Recoverable Item Control and its variants MOD-METRIC, VARI-METRIC and related extensions

Development Status : 1 - Planning [Filter]
Environment : Console (Text Based) [Filter]
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Topic : Optimization [Filter]

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Registered: 2013-08-24 22:00

11. umx: A helper library for SEM in OpenMx - umx provides functions making it easy to build, run, modify, and report the results of Structural Equation Models (SEM) using OpenMx. Examples include setting start values: umxStart(); labels: umxLabel(); and reporting; umxSummary().

Development Status : 4 - Beta [Filter]
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License : OSI Approved : Artistic License [Filter]
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Operating System : POSIX : BSD [Filter]
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Topic : Genetics [Filter]
Topic : Multivariate Statistics [Filter]
Topic : Optimization : General Purpose Continuous Solvers [Filter]

Activity Percentile: 0.00

Registered: 2013-08-28 13:52

12. RootTreeToR - !! NOTE - THIS AREA IS NO LONGER UPDATED. See https://cdcvs.fnal.gov/redmine/projects/roottreetor INSTEAD.

Development Status : 4 - Beta [Filter]
Development Status : 5 - Production/Stable [Filter]
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Environment : X11 Applications [Filter]
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Topic : Computational Physics [Filter]
Topic : Connectivity [Filter]
Topic : High Performance Computing : Large Memory [Filter]

Registered: 2009-06-17 16:54

13. Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods

Development Status : 1 - Planning [Filter]
Development Status : 2 - Pre-Alpha [Filter]
Environment : Console (Text Based) [Filter]
Environment : X11 Applications [Filter]
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Topic : Environmetrics [Filter]
Topic : Spatial Data & Statistics : Ecological Analysis [Filter]

Registered: 2011-01-24 12:50

14. STOPS - Methods that fit nonlinear distance transformations in multidimensional scaling and trade-off the fit with structure considerations to find optimal parameters.

Development Status : 3 - Alpha [Filter]
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Topic : Cluster Analysis : Hierarchical Clustering [Filter]
Topic : Multivariate Statistics : Principal Coordinates / Scaling Methods [Filter]
Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]

Activity Percentile: 0.00

Registered: 2015-02-12 00:09

15. rGEDI - rGEDI: NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing

Development Status : 4 - Beta [Filter]
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Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
Topic : Spatial Data & Statistics : Point Pattern Analysis [Filter]
Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]

Activity Percentile: 0.00

Registered: 2020-03-12 20:57

16. getMODIS - The "getMODIS" package is not further developed. Please install the "MODIS" package instead!

Development Status : 3 - Alpha [Filter]
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Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]
Topic : Time Series [Filter]

Registered: 2011-08-10 11:10

17. cardidates - Peaks in Environm. Series - cardidates: Methods for Peak Identification in Environmental Time Series

Development Status : 4 - Beta [Filter]
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Topic : Time Series [Filter]

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Registered: 2008-12-12 11:07

18. RNetCDF - R Interface to NetCDF Datasets

Development Status : 5 - Production/Stable [Filter]
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Topic : Datasets [Filter]
Topic : Spatial Data & Statistics : Reading and Writing Spatial Data [Filter]

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Registered: 2014-12-30 23:43

19. SynergizeR - This package provides programmatic access to The Synergizer service for translating between sets of biological identifiers.

Development Status : 3 - Alpha [Filter]
Environment : Console (Text Based) [Filter]
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Registered: 2011-11-04 17:46

52 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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