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68 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
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0. Evolution simulation and classification - After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : English [Filter]
- Natural Language : French [Filter]
- Operating System : POSIX : Linux (Now Filtering)
- Programming Language : Fortran [Filter]
- Programming Language : R [Filter]
- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Genetics : Population Genetics [Filter]
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Registered: 2009-07-30 17:27 |
1. KDE & MDS - Helper functions for plotting KDEs and MDS maps of geochronology and geochemistry data, for visualisation of age distributions and sample comparison.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
- Intended Audience : Other Audience [Filter]
- Natural Language : English [Filter]
- Operating System : Microsoft : Windows [Filter]
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- Programming Language : R [Filter]
- Topic : Multivariate Statistics : Visualising Multivariate Data [Filter]
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Registered: 2014-03-11 14:23 |
2. Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Operating System : MacOS [Filter]
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- Operating System : POSIX : Linux (Now Filtering)
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- Topic : Bioinformatics [Filter]
- Topic : High Performance Computing [Filter]
- Topic : Machine Learning [Filter]
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Registered: 2012-08-10 08:48 |
3. Analysis of multi-electrode array data - Functions for the analysis of spike-trains recorded using multi-electrode arrays. Tools include simple visualisation, movie generation, burst analysis, network spikes and episode detection.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Topic : Bioinformatics : Medical Science [Filter]
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Registered: 2012-04-07 09:14 |
4. R-Forge Site Admin - This project contains the R-Forge site itself. Bugs, feature requests regarding R-Forge can be send with the implemented tracker.
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- Development Status : 4 - Beta [Filter]
- Environment : Web Environment [Filter]
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- Natural Language : German [Filter]
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- Programming Language : PHP [Filter]
- Programming Language : Perl [Filter]
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- Topic : Software Development [Filter]
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Registered: 2007-05-04 09:07 |
5. Rigorous Analytics - Software for the quantitative analysis of medical imaging data. Medical imaging data formats include DICOM, AFNI, ANALYZE and NIfTI.
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- Development Status : 3 - Alpha [Filter]
- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : BSD License [Filter]
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- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2010-01-18 10:18 |
6. Bayesian Estimation and Model Checking - This package mainly deals with generalized linear spatial models in Bayesian way for estimation, prediction and model checking.
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- Development Status : 4 - Beta [Filter]
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- Environment : X11 Applications : Gnome [Filter]
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- Topic : Bayesian Statistics [Filter]
- Topic : Multivariate Statistics [Filter]
- Topic : Spatial Data & Statistics : Geostatistics [Filter]
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Registered: 2011-08-18 03:20 |
7. calibayesR - The package also provides a web-serivce interface to the CaliBayes system. See http://www.calibayes.ncl.ac.uk for more details.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU Lesser General Public License (LGPL) [Filter]
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- Operating System : Microsoft [Filter]
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- Topic : Bayesian Statistics : Specific Model Fitting [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : High Performance Computing : Grid Computing [Filter]
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Registered: 2009-11-30 09:36 |
8. WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
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- Programming Language : Perl [Filter]
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- Topic : Bioinformatics : Statistics [Filter]
- Topic : Biostatistics & Medical Statistics [Filter]
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Registered: 2013-11-21 21:46 |
9. Tools for Uplift Modeling - The R Package tools4uplift integrates some tools for exploring and modeling uplift. The content can be separated into the following steps of statistical modeling: quantization, visualization, model selection and model validation.
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Graphics : Plotting [Filter]
- Topic : Machine Learning : Model Selection and Validation [Filter]
- Topic : Regression Models [Filter]
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Registered: 2018-08-31 21:23 |
10. Clustericat - This package performs clustering for categorical data-set by the conditional correlated mixture model. It contains a function clusteringcat() performing the clustering on categorical data-set and returns object of appropriate class.
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- Development Status : 4 - Beta [Filter]
- Intended Audience : Developers [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : French [Filter]
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- Programming Language : C/C\+\+ [Filter]
- Programming Language : R [Filter]
- Topic : Cluster Analysis : Model-based Clustering [Filter]
- Topic : Multivariate Statistics : Latent Variable Approaches [Filter]
- Topic : Multivariate Statistics : Unsupervised Classification : Cluster Analysis [Filter]
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Registered: 2013-12-05 14:22 |
11. MEET.5.1:Motif Element Estimation Tools - MEET 5.1 is an R-package that includes a set of models, aprox. 550, and tools for the detection of cis-regulatory sequences.
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
- Natural Language : Spanish [Filter]
- Operating System : Microsoft : Windows : Windows NT/2000/XP [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Mathematics [Filter]
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Registered: 2011-08-10 14:27 |
12. Dave Armstrong's Misc Functions - Package contains functions to aid in the presentation and interpretation of GLMs and related models. These include utilities to help deal with present interactions in linear and logit/probit models, first differences in predicted probabilities, etc...
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- Development Status : 4 - Beta [Filter]
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- Programming Language : R [Filter]
- Topic : Regression Models [Filter]
- Topic : Social Sciences : Analysis of Categorical and Count Data [Filter]
- Topic : Social Sciences : Linear and Generalized Linear Models [Filter]
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Registered: 2012-05-07 16:37 |
13. Harmony - This package is a natural language processing (NLP) library that allows users to access large language models and use them to compare datasets where variable names are in unstructured text form. The target users are often academic researchers in the social sciences, such as psychology/mental health. We are actively recruiting contributors. We have an existing Python library also.
The source code is at: https://github.com/harmonydata/harmony_r
The web front-end of the tool is at: https://harmonydata.ac.uk/
What does Harmony do?
* Psychologists and social scientists often have to match items in different questionnaires, such as "I often feel anxious" and "Feeling nervous, anxious or afraid".
* This is called harmonisation.
* Harmonisation is a time consuming and subjective process.
* Going through long PDFs of questionnaires and putting the questions into Excel is no fun.
* Enter Harmony, a tool that uses natural language processing and generative AI models to help researchers harmonise questionnaire items, even in different languages.
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- Topic : Text : Text Mining [Filter]
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Registered: 2025-02-13 10:40 |
14. cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.
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- Development Status : 4 - Beta [Filter]
- Intended Audience : End Users/Desktop [Filter]
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- Programming Language : R [Filter]
- Topic : Bioinformatics : Statistics [Filter]
- Topic : Bioinformatics : Visualization [Filter]
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Registered: 2012-07-12 22:01 |
15. NDVI Time Series extraction and analysis - The routines extract automatically NDVI time series from different satellites (AVHRR, Spot Vegetation, MODIS) and provide tools to display and analyze them. Phenological metrics can be computed for every season as well as vegetation anomaly maps.
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- Development Status : 4 - Beta [Filter]
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- License : OSI Approved : GNU General Public License (GPL) [Filter]
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- Programming Language : R [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2011-06-23 07:05 |
16. cardidates - Peaks in Environm. Series - cardidates: Methods for Peak Identification in Environmental Time Series
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- Development Status : 4 - Beta [Filter]
- Environment : Console (Text Based) [Filter]
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- Programming Language : R [Filter]
- Topic : Time Series [Filter]
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Registered: 2008-12-12 11:07 |
17. OUwie - Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck (OU) models that allow the strength of selection and drift to vary across selective regimes.
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- Programming Language : R [Filter]
- Topic : Genetics : Phylogenetics [Filter]
- Topic : Spatial Data & Statistics : Ecological Analysis [Filter]
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Registered: 2011-07-13 13:38 |
18. grainscape - Create grains of connectivity and minimum planar graph models to calculate effective distances for landscape connectivity at multiple scales.
**Development of this package has moved to GitHub (https://achubaty.github.io/grainscape).**
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Registered: 2012-03-07 12:18 |
19. Quasi-likelihood parameter estimation - The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.
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- Topic : Bioinformatics : Statistics [Filter]
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Registered: 2017-08-30 21:22 |
68 projects in result set. Displaying 20 per page. Projects sorted by activity ranking.
<1>
